ewissel / hAMRoasterLinks
hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
☆22Updated last year
Alternatives and similar repositories for hAMRoaster
Users that are interested in hAMRoaster are comparing it to the libraries listed below
Sorting:
- De novo VIral Genome Annotator☆23Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 7 months ago
- Download assembly files from NCBI☆12Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Neptune: Genomic Signature Discovery☆20Updated 11 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- ☆16Updated 2 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated last year
- Resolving Species Level Classification Using Emu☆14Updated last year
- Raspir, the rare species identifier☆11Updated 2 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Updated last year
- ☆11Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated last month
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- MAG Circularization Method☆32Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated 2 weeks ago