gamcil / cblaster

Related projects ⓘ

Alternatives and complementary repositories for cblaster

• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆73Updated this week
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆110Updated last year
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆84Updated last year
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆111Updated 2 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆148Updated this week
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆77Updated 2 weeks ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆67Updated 2 months ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆107Updated last week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆84Updated last year
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆56Updated 2 months ago
• rcedgar / usearch12
  Open-source usearch
  ☆100Updated 5 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆61Updated last week
• rrwick / Perfect-bacterial-genome-tutorial
  ☆119Updated 5 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆140Updated 4 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆173Updated 5 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆87Updated 3 months ago
• KatyBrown / CIAlign
  ☆117Updated 2 months ago
• fwhelan / coinfinder
  A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
  ☆97Updated last year
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆194Updated last week
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆66Updated last year
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆69Updated 5 months ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆128Updated this week
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆77Updated last month
• BenoitMorel / GeneRax
  ☆68Updated 10 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆72Updated last year
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆87Updated last month
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆81Updated 6 years ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆178Updated 4 months ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆70Updated last year