BolognaBiocomp / deepsigLinks
DeepSig - Predictor of signal peptides in proteins based on deep learning
☆27Updated 2 years ago
Alternatives and similar repositories for deepsig
Users that are interested in deepsig are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆33Updated last year
- ☆19Updated 3 years ago
- ☆31Updated 4 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated last month
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last month
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last month
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated 3 weeks ago
- metabolic heatmap☆22Updated 6 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated last month
- MGnify API toolkit☆19Updated 10 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆29Updated last week
- ☆42Updated 6 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 3 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆28Updated 2 weeks ago
- Predicting biosynthetic gene clusters in genomes☆42Updated 12 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last week
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆70Updated 3 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago