BolognaBiocomp / deepsig
DeepSig - Predictor of signal peptides in proteins based on deep learning
☆25Updated last year
Related projects ⓘ
Alternatives and complementary repositories for deepsig
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- antimicrobial peptide prediction in R☆27Updated last year
- ☆35Updated this week
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆20Updated last year
- ☆30Updated 3 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆28Updated this week
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆30Updated 2 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆15Updated last year
- ☆19Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆29Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆35Updated 7 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Nanopore UMI-linked consensus sequencing☆12Updated 3 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆18Updated 6 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆19Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated 7 months ago
- metabolic heatmap☆18Updated 5 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated this week
- ☆18Updated 2 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆19Updated 3 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 5 months ago
- PaperBLAST: find papers about a protein or its homologs☆35Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆79Updated 2 years ago