BolognaBiocomp / deepsigLinks
DeepSig - Predictor of signal peptides in proteins based on deep learning
☆26Updated 2 years ago
Alternatives and similar repositories for deepsig
Users that are interested in deepsig are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Python bindings for the TaxonKit library☆40Updated 3 weeks ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆58Updated 2 weeks ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆31Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Protein Sequence Annotation with Language Models☆20Updated last week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆21Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 5 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆25Updated 3 weeks ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- antimicrobial peptide prediction in R☆31Updated 5 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated this week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 9 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆20Updated 2 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆22Updated 5 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Nail is an Alignment Inference tooL☆48Updated last week
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- ☆30Updated 5 months ago
- Software for predicting translation initiation rates in bacteria☆24Updated 6 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 3 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆52Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆49Updated 4 months ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 6 years ago