ablab / plasmidVerify
plasmidVerify: plasmid contig verification tool
☆12Updated 4 years ago
Alternatives and similar repositories for plasmidVerify:
Users that are interested in plasmidVerify are comparing it to the libraries listed below
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Intra-species bacterial contamination detection☆24Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Prophage Activity Estimator☆26Updated 7 months ago
- Plasmid exploration of bacterial genomes☆18Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 5 years ago
- ☆18Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated 3 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Influenza data pipeline to automate genotyping assignment☆22Updated 2 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- ☆31Updated last year
- IslandPath standalone software☆31Updated last year
- Calculate assocations between genes and traits☆20Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- MAGScoT - a MAG scoring and refinement tool☆31Updated 3 months ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- ☆24Updated 6 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆22Updated 3 weeks ago