ablab / plasmidVerifyLinks
plasmidVerify: plasmid contig verification tool
☆15Updated 5 years ago
Alternatives and similar repositories for plasmidVerify
Users that are interested in plasmidVerify are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Plasmid exploration of bacterial genomes☆23Updated 3 years ago
- ☆20Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- ☆33Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Prophage Activity Estimator☆30Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 2 months ago
- whole genome MLST analysis☆50Updated 7 months ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- ☆20Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 7 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- IslandPath standalone software☆35Updated 2 years ago
- ☆26Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated last week