JoanaMPereira / GCsnapLinks
GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
☆33Updated last year
Alternatives and similar repositories for GCsnap
Users that are interested in GCsnap are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 7 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆78Updated last week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 weeks ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- ☆31Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆49Updated 10 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 5 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆58Updated 7 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆60Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated last week
- Generation and updating of protein families☆21Updated this week
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated this week
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- metabolic heatmap☆21Updated 6 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 3 months ago
- ☆31Updated 10 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆36Updated last year
- ☆36Updated 4 months ago
- ☆19Updated 3 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 3 months ago
- Python bindings for the TaxonKit library☆41Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 3 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago