JoanaMPereira / GCsnapView external linksLinks
GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
☆34Apr 16, 2024Updated last year
Alternatives and similar repositories for GCsnap
Users that are interested in GCsnap are comparing it to the libraries listed below
Sorting:
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Jan 28, 2026Updated 2 weeks ago
- Find clustered hits from a BLAST search☆133Jan 16, 2026Updated last month
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 3 weeks ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 weeks ago
- Locate antiviral defence systems in prokaryotic genomes☆68Oct 22, 2024Updated last year
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- An R package designed for drawing gene arrow maps☆95Sep 29, 2025Updated 4 months ago
- Federating genomes with love (and synteny derived from functional annotations)☆44May 2, 2025Updated 9 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated last year
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Nov 6, 2024Updated last year
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Updated this week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Nov 25, 2025Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆289Nov 10, 2025Updated 3 months ago
- ☆82Nov 27, 2025Updated 2 months ago
- ☆17Mar 20, 2025Updated 10 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Jul 21, 2025Updated 6 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated last year
- ☆23Sep 9, 2025Updated 5 months ago
- ☆16Jan 14, 2026Updated last month
- NEFF Calculator and MSA File Converter☆13Sep 16, 2025Updated 5 months ago
- ☆14Apr 3, 2025Updated 10 months ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated 10 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Oct 22, 2025Updated 3 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 2 months ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆73Nov 11, 2025Updated 3 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Aug 21, 2025Updated 5 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 4 months ago
- ☆10Feb 20, 2024Updated last year
- ☆13Updated this week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated 11 months ago
- ☆13Aug 30, 2024Updated last year
- Benchmarking scripts for Gaia☆13Apr 10, 2025Updated 10 months ago