JoanaMPereira / GCsnapLinks
GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
☆29Updated last year
Alternatives and similar repositories for GCsnap
Users that are interested in GCsnap are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆69Updated 3 weeks ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 8 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆50Updated 10 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated last month
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- A package to annotate protein sequences☆59Updated 4 months ago
- metabolic heatmap☆20Updated 6 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 3 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- ☆30Updated this week
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 5 months ago
- ☆31Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 11 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 4 months ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆26Updated 2 weeks ago
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- ☆19Updated 2 years ago