JoanaMPereira / GCsnapLinks
GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
☆30Updated last year
Alternatives and similar repositories for GCsnap
Users that are interested in GCsnap are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 8 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- ☆30Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆53Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆18Updated last month
- UFCG: Universal Fungal Core Genes☆34Updated last month
- ☆31Updated 3 years ago
- ☆39Updated 3 months ago
- ☆33Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated this week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated 9 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 6 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆45Updated 3 weeks ago
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated 2 weeks ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated 7 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated 10 months ago