fwhelan / coinfinderLinks
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
☆102Updated last year
Alternatives and similar repositories for coinfinder
Users that are interested in coinfinder are comparing it to the libraries listed below
Sorting:
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆135Updated 2 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆73Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 11 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 4 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆87Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 11 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆69Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆70Updated 3 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆109Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆160Updated last week
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆47Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆75Updated 7 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆90Updated this week
- IS mapping software☆56Updated 3 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆79Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆81Updated 3 months ago
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Reorients assembled microbial sequences☆124Updated 4 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 3 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- Collection of scripts for bacterial genomics☆47Updated 5 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 3 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 4 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆45Updated 2 years ago