fwhelan / coinfinder
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
☆97Updated last year
Alternatives and similar repositories for coinfinder:
Users that are interested in coinfinder are comparing it to the libraries listed below
- A toolbox for comparative genomics.☆100Updated 3 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆88Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆112Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆93Updated last week
- Reorients assembled microbial sequences☆107Updated 2 weeks ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆117Updated 2 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆62Updated 4 years ago
- ☆79Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆111Updated 3 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆72Updated 4 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆68Updated 7 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated last year
- ☆127Updated 7 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆66Updated last month
- IS mapping software☆53Updated 3 years ago
- Bioinformatics program inStrain☆157Updated 8 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 3 years ago
- Metatranscriptomics Tutorial☆60Updated last year
- Supporting code for uncultivated gut virus manuscript☆68Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆93Updated this week
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆134Updated 3 months ago
- Making whole bacterial genome sequencing data analysis easy☆102Updated 2 months ago
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year