ZoyavanMeel / ORCALinks
Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.
☆17Updated last year
Alternatives and similar repositories for ORCA
Users that are interested in ORCA are comparing it to the libraries listed below
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 3 weeks ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 5 months ago
- ☆20Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- ☆32Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆45Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆23Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 weeks ago
- ☆22Updated 4 months ago
- Population analysis PIPEline 🛠🧬☆18Updated last month
- Primer design from single genes to whole gene families for unlocking the tree of life☆15Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- ☆17Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago