odelaneau / shapeit5
Segmented HAPlotype Estimation and Imputation Tool
☆71Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for shapeit5
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 2 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated 4 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆64Updated 5 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆75Updated last month
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- Burden testing against public controls☆50Updated 8 months ago
- Tools to work with GWAS-VCF summary statistics files☆105Updated last month
- BAM Statistics, Feature Counting and Annotation☆145Updated 3 weeks ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆28Updated 5 months ago
- Relevant papers for CNV and SV approaches☆94Updated 2 weeks ago
- ☆37Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆63Updated 3 weeks ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- WisecondorX — An evolved WISECONDOR☆94Updated 2 months ago
- A tool for profiling long STRs from short reads☆88Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆98Updated this week
- Data and information about the Polaris study☆52Updated 5 years ago
- ☆36Updated 7 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆67Updated 9 months ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Allele-specific alignment sorting☆53Updated last year
- phasing and Allele Specific Expression from RNA-seq☆111Updated 4 months ago