odelaneau / shapeit5Links
Segmented HAPlotype Estimation and Imputation Tool
☆91Updated 2 months ago
Alternatives and similar repositories for shapeit5
Users that are interested in shapeit5 are comparing it to the libraries listed below
Sorting:
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆117Updated 3 months ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Updated last year
- Tools to work with GWAS-VCF summary statistics files☆125Updated 2 months ago
- A tool for profiling long STRs from short reads☆100Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Somatic structural variant caller for long-read data☆80Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- WisecondorX — An evolved WISECONDOR☆105Updated 2 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆82Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆88Updated 4 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆83Updated 2 weeks ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 weeks ago
- Segmented HAPlotype Estimation and Imputation Tool☆95Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- ☆123Updated 2 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated 3 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆141Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 3 weeks ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago