odelaneau / shapeit5Links
Segmented HAPlotype Estimation and Imputation Tool
☆80Updated 9 months ago
Alternatives and similar repositories for shapeit5
Users that are interested in shapeit5 are comparing it to the libraries listed below
Sorting:
- Tools to work with GWAS-VCF summary statistics files☆119Updated 8 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆111Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆84Updated 3 months ago
- phasing and Allele Specific Expression from RNA-seq☆115Updated 10 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- Allele-specific alignment sorting☆56Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆65Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆64Updated 2 months ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆55Updated 2 years ago
- Powerful statistics for VCF files☆69Updated last year
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆81Updated last week
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago