KCCG / mityLinks
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
☆38Updated last month
Alternatives and similar repositories for mity
Users that are interested in mity are comparing it to the libraries listed below
Sorting:
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆35Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Updated 3 years ago
- ☆51Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Scripts and utilities related to analyzing short tandem repeats (STRs).☆39Updated 2 weeks ago
- Structural variant (SV) analysis tools☆38Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last week
- ☆15Updated last year
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ☆23Updated 9 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Generic human DNA variant annotation pipeline☆58Updated last year
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year