mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
☆44Sep 8, 2025Updated last year
Alternatives and similar repositories for mity
Users that are interested in mity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 3 years ago
- mtDNA Variant Caller☆36Dec 23, 2024Updated last year
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- ☆25Mar 20, 2024Updated 2 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆16Oct 17, 2021Updated 5 years ago
- ☆20Mar 6, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 8 months ago
- Workflow for human mitochondria analysis☆10Nov 2, 2024Updated last year
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 4 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Suite of tools for pangenomics built using vg☆25Oct 9, 2026Updated 3 weeks ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 8 months ago
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A structural variation pipeline for short-read sequencing☆209Updated this week
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆79Feb 28, 2023Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Generic human DNA variant annotation pipeline☆59Aug 11, 2026Updated 2 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 3 years ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- De novo tandem repeat calling from PacBio HiFi data☆19Oct 1, 2026Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 3 years ago
- ☆11Apr 20, 2018Updated 8 years ago