KCCG / mityLinks
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
☆37Updated 2 months ago
Alternatives and similar repositories for mity
Users that are interested in mity are comparing it to the libraries listed below
Sorting:
- ☆15Updated last year
- ☆35Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- ☆51Updated 6 years ago
- ☆23Updated 8 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Scripts and utilities related to analyzing short tandem repeats (STRs).☆38Updated last week
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 3 weeks ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 11 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 2 weeks ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆58Updated 5 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago