Alternatives and similar repositories for regenie

Users that are interested in regenie are comparing it to the libraries listed below

• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆180Updated 10 months ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated 10 months ago
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆178Updated 7 months ago
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆219Updated last week
• konradjk / loftee
  ☆178Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 6 months ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆181Updated 3 months ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆188Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆85Updated 7 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated this week
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆173Updated 6 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆168Updated 2 months ago
• jianyangqt / gcta
  GCTA software
  ☆96Updated 3 months ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆136Updated this week
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆152Updated 4 months ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆112Updated 2 years ago
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆168Updated last month
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆192Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆116Updated this week
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆372Updated 3 weeks ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆139Updated 3 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆219Updated last year
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆78Updated 2 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆120Updated 8 months ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆63Updated 2 weeks ago
• PMBio / peer
  A factor analysis package
  ☆100Updated 13 years ago
• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆364Updated 2 years ago