rgcgithub / regenieLinks
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
☆224Updated 3 months ago
Alternatives and similar repositories for regenie
Users that are interested in regenie are comparing it to the libraries listed below
Sorting:
- ☆193Updated 3 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆185Updated last year
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆143Updated 3 weeks ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆232Updated 3 weeks ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆199Updated last year
- Ultrafast GPU-enabled QTL mapper☆189Updated 2 months ago
- ☆180Updated 2 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆122Updated 8 months ago
- ☆98Updated 3 years ago
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆195Updated 2 years ago
- Rare variant test software for next generation sequencing data☆140Updated 3 years ago
- Polygenic prediction via continuous shrinkage priors☆188Updated 9 months ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆156Updated last week
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆174Updated 8 months ago
- Linear mixed model for genomic analyses.☆105Updated 4 years ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- Cross-population polygenic prediction☆88Updated 9 months ago
- PrediXcan Project☆112Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆163Updated 2 weeks ago
- MetaXcan software and manuscript☆171Updated last month
- GTEx & TOPMed data production and analysis pipelines☆378Updated 2 months ago
- methods for functional summary-based imputation☆87Updated 3 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 3 months ago
- A factor analysis package☆100Updated 13 years ago
- A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.☆162Updated 3 months ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆82Updated 11 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆158Updated this week
- Repo for the R package coloc☆171Updated 3 weeks ago
- Low Coverage Calling of Genotypes☆155Updated 6 months ago