kolikem / loma
☆14Updated last year
Alternatives and similar repositories for loma:
Users that are interested in loma are comparing it to the libraries listed below
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 6 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- SV genotyper for long reads with a variation graph☆12Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆35Updated last year
- The MafFilter genome alignment processor☆17Updated 3 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆30Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- SV calling for diploid assemblies☆26Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆29Updated 8 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Phasing reads with secondary alignments☆17Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ☆23Updated 7 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- FastK based version of Merqury☆24Updated last month
- Implementation of ToL genome assembly workflows☆20Updated this week
- Convert HAL to VG☆22Updated 8 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month