☆16Apr 2, 2024Updated 2 years ago
Alternatives and similar repositories for loma
Users that are interested in loma are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- ☆130Jul 22, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20Nov 17, 2025Updated 9 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 2 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Reference bias measuring toolkit☆21Mar 12, 2026Updated 5 months ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 4 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated last month
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆21Aug 13, 2024Updated 2 years ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Gene copy number prediction from k-mer frequencies☆18Apr 15, 2026Updated 4 months ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 3 years ago
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 5 years ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 11 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- ☆30Mar 1, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated 2 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 8 months ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆35Feb 5, 2026Updated 6 months ago