gjun / muCNVLinks
☆20Updated last year
Alternatives and similar repositories for muCNV
Users that are interested in muCNV are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆13Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆16Updated 8 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 5 months ago
- Benchmark structural variant calls against a reference set☆17Updated 10 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Sample Contamination Estimate from VCF☆21Updated 10 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago