Alternatives and similar repositories for muCNV

Users that are interested in muCNV are comparing it to the libraries listed below

• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• wdecoster / surpyvor
  A python wrapper around SURVIVOR
  ☆20Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated last year
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated last month
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• mcfrith / dnarrange
  ☆16Updated 6 months ago
• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 9 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 4 months ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated last month
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated last year
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• jts / mbtools
  ☆14Updated last year
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 7 months ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 3 months ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated 4 months ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆13Updated 3 years ago
• Parsoa / Nebula
  Ultra-efficient mapping-free structural variation genotyper
  ☆19Updated 4 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 5 months ago