Alternatives and similar repositories for muCNV:

Users that are interested in muCNV are comparing it to the libraries listed below

• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated last month
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• mcfrith / dnarrange
  ☆16Updated 3 months ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 2 months ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 3 years ago
• collaborativebioinformatics / nibSV
  ☆9Updated 3 years ago
• gagneurlab / splicemap
  ☆20Updated 6 months ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 3 weeks ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 months ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆18Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 4 months ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆12Updated 3 years ago
• kcleal / SV_Benchmark_CMRG_GIAB
  Structural variant benchmark
  ☆17Updated 2 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated last week
• jts / mbtools
  ☆14Updated last year
• Platinum-Pedigree-Consortium / Platinum-Pedigree-Datasets
  ☆19Updated 2 months ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 5 months ago