gjun / muCNVLinks
☆20Updated 2 years ago
Alternatives and similar repositories for muCNV
Users that are interested in muCNV are comparing it to the libraries listed below
Sorting:
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- ☆12Updated 4 years ago
- ☆16Updated 11 months ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 5 months ago
- ☆14Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Updated last month
- ☆13Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- Sample Contamination Estimate from VCF☆20Updated last year
- ☆16Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago