Mangul-Lab-USC / benchmarking_SVLinks
Updated figures for "A benchmarking of WGS-based structural variant callers" paper
☆27Updated 3 years ago
Alternatives and similar repositories for benchmarking_SV
Users that are interested in benchmarking_SV are comparing it to the libraries listed below
Sorting:
- ☆35Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- ☆16Updated 8 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- ☆51Updated 6 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 7 months ago
- A python wrapper around SURVIVOR☆20Updated last year
- CADD-SV – a framework to score the effect of structural variants☆15Updated 6 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago