Alternatives and similar repositories for benchmarking_SV

Users that are interested in benchmarking_SV are comparing it to the libraries listed below

• talkowski-lab / svtk
  ☆35Updated 4 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆33Updated last year
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated last month
• mcfrith / dnarrange
  ☆16Updated 8 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 6 months ago
• gymrek-lab / EnsembleTR
  Tools for merging Tandem Repeat VCF files
  ☆33Updated 4 months ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated last year
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated last year
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 3 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 6 months ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 7 months ago
• wdecoster / surpyvor
  A python wrapper around SURVIVOR
  ☆20Updated last year
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆15Updated 6 months ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated last year
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 6 months ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 5 years ago
• delocalizer / streammd
  Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
  ☆23Updated 2 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆16Updated 2 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 3 months ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated last year
• gedoardo83 / GARFIELD-NGS
  GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
  ☆17Updated 6 years ago