grimmlab / permGWASLinks
Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
☆30Updated 8 months ago
Alternatives and similar repositories for permGWAS
Users that are interested in permGWAS are comparing it to the libraries listed below
Sorting:
- tutorial on pggb☆35Updated 6 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- ☆43Updated last year
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆21Updated 2 months ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 9 months ago
- ☆42Updated last year
- read and analyse RepeatMasker output☆24Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆28Updated 6 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- Scripts that used in our chicken T2T manuscript.☆20Updated 2 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated 11 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- ☆15Updated 3 years ago
- ☆22Updated 6 years ago
- Selection outlier scan with population branch statistic☆13Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆24Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆22Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- ☆16Updated 7 months ago
- ☆30Updated 6 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago