Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
☆35Nov 14, 2024Updated last year
Alternatives and similar repositories for permGWAS
Users that are interested in permGWAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆10Jan 27, 2025Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Sep 5, 2025Updated 9 months ago
- ☆23Oct 30, 2022Updated 3 years ago
- ☆11Mar 14, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆34Jun 12, 2025Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 10 months ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 3 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆30Aug 2, 2022Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 7 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆31Apr 2, 2026Updated 2 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 9 months ago
- ☆32Jan 3, 2025Updated last year
- Pangenome-based genome inference☆174Jun 15, 2026Updated 2 weeks ago
- ☆15Feb 22, 2022Updated 4 years ago
- Fast manhattenplots using ggplot2☆13Apr 24, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…☆35Dec 29, 2025Updated 6 months ago
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆30Sep 13, 2023Updated 2 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- tomato graph pangenome☆92Dec 13, 2022Updated 3 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆44May 8, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆56Mar 7, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆134Jun 15, 2026Updated 2 weeks ago
- conserved non-coding sequence☆17Feb 21, 2022Updated 4 years ago
- A tool to plot significant regions of GWAS☆29Jan 27, 2023Updated 3 years ago
- Make LocusZoom-like plots with your own LD matrix.☆50Jul 17, 2022Updated 3 years ago