Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
☆35Nov 14, 2024Updated last year
Alternatives and similar repositories for permGWAS
Users that are interested in permGWAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 3 years ago
- ☆10Jan 27, 2025Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 2 months ago
- ☆23Oct 30, 2022Updated 3 years ago
- ☆11Mar 14, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 6 months ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 4 years ago
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 6 months ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆30Sep 13, 2023Updated 3 years ago
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Apr 22, 2026Updated 5 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 11 months ago
- Pangenome-based genome inference☆181Sep 15, 2026Updated 3 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 11 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆62Sep 6, 2025Updated last year
- ☆37Aug 3, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Feb 22, 2022Updated 4 years ago
- Fast manhattenplots using ggplot2☆14Apr 24, 2026Updated 5 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- tomato graph pangenome☆95Dec 13, 2022Updated 3 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…☆35Dec 29, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆45May 8, 2024Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- A tool to plot significant regions of GWAS☆31Jan 27, 2023Updated 3 years ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆25Oct 2, 2026Updated last week
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 4 years ago