odelaneau / shapeit4Links
Segmented HAPlotype Estimation and Imputation Tool
☆94Updated last year
Alternatives and similar repositories for shapeit4
Users that are interested in shapeit4 are comparing it to the libraries listed below
Sorting:
- Haplotype based scans for selection☆130Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Segmented HAPlotype Estimation and Imputation Tool☆80Updated 9 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Phased assembly variant caller☆116Updated 6 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆81Updated last week
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last week
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆60Updated last month
- VCF-kit: Assorted utilities for the variant call format☆130Updated last month
- SV caller for nanopore data☆91Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆107Updated 2 years ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- A library for running k-mers based GWAS☆109Updated 7 months ago
- Same species annotation lift over pipeline.☆97Updated last year
- Toolkit for calling structural variants using short or long reads☆104Updated this week
- Structural Variant Index☆74Updated 5 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆112Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- Documentation archive for GATK tools and workflows☆85Updated 5 years ago
- ABRA2☆92Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago