broadinstitute / gatk-svLinks
A structural variation pipeline for short-read sequencing
☆188Updated this week
Alternatives and similar repositories for gatk-sv
Users that are interested in gatk-sv are comparing it to the libraries listed below
Sorting:
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- VarDict☆200Updated last year
- ☆126Updated 2 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Jasmine: SV Merging Across Samples☆215Updated 5 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated 2 weeks ago
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- Annotation and Ranking of Structural Variation☆258Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- ☆94Updated 2 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆150Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- Structural variation and indel detection by local assembly☆246Updated last week
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 9 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago