broadinstitute / gatk-svLinks
A structural variation pipeline for short-read sequencing
☆189Updated this week
Alternatives and similar repositories for gatk-sv
Users that are interested in gatk-sv are comparing it to the libraries listed below
Sorting:
- ☆130Updated last week
- Annotation and Ranking of Structural Variation☆261Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- VarDict☆198Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated last week
- Full-Length Alternative Isoform analysis of RNA☆230Updated last week
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆202Updated 3 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated last month
- The nimble & robust variant annotator☆182Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆224Updated 3 years ago
- Structural variation and indel detection by local assembly☆247Updated 2 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆231Updated last week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆234Updated 2 months ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆153Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆269Updated 5 months ago
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated last week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆251Updated 3 weeks ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 8 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆212Updated 2 weeks ago
- A minimap2 frontend for PacBio native data formats☆201Updated 4 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago