A structural variation pipeline for short-read sequencing
☆202May 22, 2026Updated last week
Alternatives and similar repositories for gatk-sv
Users that are interested in gatk-sv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant toolkit for VCFs☆411May 22, 2026Updated last week
- TIDDIT - structural variant calling☆79Mar 22, 2026Updated 2 months ago
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- Annotation and Ranking of Structural Variation☆297Updated this week
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Structural variation and indel detection by local assembly☆255May 14, 2026Updated 2 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆517Updated this week
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 5 years ago
- ☆35Mar 2, 2021Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆115May 18, 2026Updated last week
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated last year
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Structural variant and indel caller for mapped sequencing data☆465Oct 11, 2025Updated 7 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆214Mar 16, 2026Updated 2 months ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Long read based human genomic structural variation detection with cuteSV☆287Mar 26, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast HLA type inference from whole-genome data☆145Apr 3, 2025Updated last year
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- Deep learning framework for SV calling and genotyping☆113Nov 8, 2023Updated 2 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆417Dec 31, 2025Updated 4 months ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆125Oct 9, 2025Updated 7 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 2 months ago
- ☆44Sep 10, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆51Aug 27, 2019Updated 6 years ago
- A tool for estimating repeat sizes☆210Jan 30, 2024Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆185Apr 12, 2024Updated 2 years ago
- A tool for visualizing alignments of reads in regions containing tandem repeats☆90Apr 20, 2026Updated last month
- Warp Analysis Research Pipelines☆226May 22, 2026Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year