Alternatives and similar repositories for DeepSVP:

Users that are interested in DeepSVP are comparing it to the libraries listed below

• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 11 months ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 2 months ago
• gjun / muCNV
  ☆20Updated last year
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• mcfrith / dnarrange
  ☆16Updated last month
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆12Updated 2 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• gymreklab / STRDenovoTools
  Toolkit for calling and analyzing de novo STR mutations
  ☆13Updated last year
• KiddLab / QuicK-mer2
  ☆11Updated last year
• gagneurlab / splicemap
  ☆19Updated 5 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• broadinstitute / gnomad-mitochondria
  ☆13Updated 11 months ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• RacconC / gtftools
  ☆13Updated last year
• collaborativebioinformatics / nibSV
  ☆9Updated 2 years ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated last month
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 7 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last month
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆10Updated 4 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 4 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆29Updated 10 months ago
• heinc1010 / BAMixChecker
  BAMixChecker: A fast and efficient tool for sample matching checkup
  ☆14Updated 2 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last week