A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
☆26Jul 27, 2026Updated last month
Alternatives and similar repositories for denovotranscript
Users that are interested in denovotranscript are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compare the quality of multiple genomes, along with their annotations.☆26Updated this week
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆28Aug 20, 2026Updated last week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Jul 28, 2026Updated last month
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆20Updated this week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆51Aug 19, 2026Updated last week
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆113Aug 13, 2026Updated 2 weeks ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Jul 27, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆53Aug 17, 2026Updated last week
- ☆13Aug 10, 2026Updated 3 weeks ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Jul 28, 2026Updated last month
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Aug 12, 2026Updated 2 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆31Jul 21, 2026Updated last month
- ☆27Jun 20, 2023Updated 3 years ago
- Test data for MultiQC.☆24Updated this week
- A workflow and scripts for large-scale antiSMASH analyses☆51Apr 3, 2025Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆78Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.☆14Updated this week
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 7 months ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Updated this week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated last month
- Simple bacterial assembly and annotation pipeline☆93Jul 29, 2026Updated last month
- ☆23Jan 13, 2026Updated 7 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆62Jul 27, 2026Updated last month
- DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of…☆41Jun 29, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.☆16Aug 14, 2026Updated 2 weeks ago
- A comprehensive prokaryotic genome annotation pipeline☆91Aug 18, 2026Updated last week
- Stray has been renamed fido, development continues at jsilve24/fido☆23Jan 26, 2022Updated 4 years ago
- Fast DNA search and [host] depletion using minimizers☆125Updated this week
- The binning tool with dynamic contrastive learning and deep language model☆25Aug 14, 2026Updated 2 weeks ago
- Workshop: RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR☆13Aug 23, 2021Updated 5 years ago
- QDNAseq package for Bioconductor☆56Jul 27, 2024Updated 2 years ago