A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
☆13Feb 17, 2026Updated last month
Alternatives and similar repositories for molkart
Users that are interested in molkart are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Feb 28, 2026Updated last month
- ☆34Oct 10, 2025Updated 6 months ago
- An introduction to OME-Zarr for big bioimaging data☆25Apr 6, 2026Updated last week
- Multiple-choice microscopy pipeline☆149Feb 27, 2026Updated last month
- Gamified image segmentation quality estimation☆19May 1, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆41Apr 8, 2026Updated last week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆16Updated this week
- ☆92Updated this week
- Morphological features from images and masks made easy.☆44Mar 31, 2026Updated 2 weeks ago
- Compendium of tools for the Imaging Platform☆15Apr 2, 2026Updated last week
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 7 months ago
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated last month
- ☆28Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 10 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆34Apr 7, 2026Updated last week
- ☆37Dec 13, 2023Updated 2 years ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆30Nov 20, 2025Updated 4 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 weeks ago
- A plugin for exporting RDF from OMERO☆15Feb 27, 2026Updated last month
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆24Apr 8, 2026Updated last week
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆23Nov 20, 2025Updated 4 months ago
- ☆15Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆68Dec 2, 2025Updated 4 months ago
- Static plotting for spatialdata☆78Apr 8, 2026Updated last week
- Bioinformatics web-platform visualisation dashboard creation☆40Mar 29, 2026Updated 2 weeks ago
- ☆30Oct 4, 2024Updated last year
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆22Jan 12, 2026Updated 3 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆75Mar 18, 2026Updated 3 weeks ago
- Test data for MultiQC.☆24Mar 20, 2026Updated 3 weeks ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Apr 2, 2026Updated last week
- ☆13Apr 6, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jan 17, 2026Updated 2 months ago
- R Shiny wrapper for Mol* (/'molstar/) - A visualization toolkit of large-scale molecular data☆19Apr 8, 2026Updated last week
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆49May 26, 2025Updated 10 months ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 3 weeks ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆72Apr 5, 2026Updated last week
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Correlated and Signal-Dependent Denoising☆31Apr 7, 2026Updated last week