A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
☆13Feb 17, 2026Updated 2 weeks ago
Alternatives and similar repositories for molkart
Users that are interested in molkart are comparing it to the libraries listed below
Sorting:
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Feb 28, 2026Updated last week
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆40Feb 27, 2026Updated last week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆16Feb 23, 2026Updated last week
- Multiple-choice microscopy pipeline☆147Feb 27, 2026Updated last week
- ☆28Updated this week
- Bioinformatics web-platform visualisation dashboard creation☆38Updated this week
- R Shiny wrapper for Mol* (/'molstar/) - A visualization toolkit of large-scale molecular data☆19Feb 17, 2026Updated 2 weeks ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated 10 months ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆23Updated this week
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆21Nov 20, 2025Updated 3 months ago
- ☆33Oct 10, 2025Updated 4 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 3 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 3 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Test data for MultiQC.☆24Updated this week
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 9 months ago
- Morphological features from images and masks made easy.☆43Feb 26, 2026Updated last week
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆30Nov 20, 2025Updated 3 months ago
- Spatial Single-Cell Analysis Toolkit☆110Feb 20, 2026Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Dec 2, 2025Updated 3 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Feb 27, 2026Updated last week
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated 2 months ago
- ☆89Updated this week
- ☆30Oct 4, 2024Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Dec 1, 2025Updated 3 months ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆71Feb 12, 2026Updated 3 weeks ago
- Static plotting for spatialdata☆74Updated this week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 3 months ago
- ☆27Oct 12, 2024Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆40Updated this week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- ☆37Dec 13, 2023Updated 2 years ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Feb 27, 2026Updated last week
- Surveillance of pathogens using population genomics and sequencing☆58Feb 13, 2026Updated 3 weeks ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆55Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 7 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year