nf-core / molkartLinks
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
☆12Updated last month
Alternatives and similar repositories for molkart
Users that are interested in molkart are comparing it to the libraries listed below
Sorting:
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆15Updated last month
- ☆27Updated 7 months ago
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆27Updated this week
- ☆19Updated 2 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated 2 weeks ago
- Image Mass Cytometry analysis pipeline☆25Updated last month
- ☆29Updated last year
- Tools to handle IMC data☆23Updated 3 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆90Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- R API and htmlwidget for Vitessce☆40Updated 7 months ago
- ☆44Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆18Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated this week
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Updated last year
- An R package for performing cell typing in SMI and other single cell data☆37Updated 2 weeks ago
- Segmentation error aware clustering for multiplexed imaging☆18Updated 4 months ago
- Pipeline for designing custom probes against human genes☆16Updated 6 months ago
- Slides and Notebooks for scverse 2024☆17Updated 8 months ago
- .h5mu files interface for Seurat☆30Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆27Updated last week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆23Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- ☆28Updated 7 months ago