gatk4 RNA variant calling pipeline
☆60Apr 24, 2026Updated last week
Alternatives and similar repositories for rnavar
Users that are interested in rnavar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 10 months ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Updated this week
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆26Updated this week
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Updated this week
- Nascent Transcription Processing Pipeline☆22Updated this week
- Nanopore demultiplexing, QC and alignment pipeline☆225Nov 20, 2025Updated 5 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 5 months ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 10 months ago
- VIGOR4☆22Aug 15, 2025Updated 8 months ago
- Simple bacterial assembly and annotation pipeline☆85Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 2 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆90Apr 23, 2026Updated last week
- A GitHub action to install Nextflow☆29Updated this week
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Jun 3, 2025Updated 10 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆51Apr 17, 2026Updated 2 weeks ago
- Precision HLA typing from next-generation sequencing data☆79Updated this week
- A small-RNA sequencing analysis pipeline☆98Jan 7, 2026Updated 3 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆51Updated this week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Feb 28, 2026Updated 2 months ago
- Nextflow language support for Visual Studio Editor☆37Apr 24, 2026Updated last week
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆105Updated this week
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆24Updated this week
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated last month
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆24Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 5 months ago
- ☆21Feb 12, 2026Updated 2 months ago
- Compare the quality of multiple genomes, along with their annotations.☆20Updated this week
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 5 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆110Mar 16, 2026Updated last month
- ☆15Aug 11, 2025Updated 8 months ago