nf-core / rnavar
gatk4 RNA variant calling pipeline
☆47Updated 2 weeks ago
Alternatives and similar repositories for rnavar
Users that are interested in rnavar are comparing it to the libraries listed below
Sorting:
- visual analysis of your VCF files☆33Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 4 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated last week
- Precision HLA typing from next-generation sequencing data☆66Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆69Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated 2 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 4 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated last week
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Master of Pores 2☆23Updated 5 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆60Updated last month
- TIDDIT - structural variant calling☆73Updated last month
- A small-RNA sequencing analysis pipeline☆84Updated last week
- Gene Fusion Visualiser☆51Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 3 months ago
- Error correction of ONT transcript reads