GATB / DiscoSnpLinks
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
☆38Updated 2 years ago
Alternatives and similar repositories for DiscoSnp
Users that are interested in DiscoSnp are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- ☆49Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆81Updated 7 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆35Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆31Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- ☆31Updated 3 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Alignment-based Scrubbing pipeline☆21Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆36Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year