DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
☆41Jun 29, 2023Updated 3 years ago
Alternatives and similar repositories for DiscoSnp
Users that are interested in DiscoSnp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 8 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 6 months ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆182Apr 17, 2026Updated 5 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆66Feb 1, 2025Updated last year
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 5 months ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- k-mer counting software☆43Feb 8, 2022Updated 4 years ago
- ☆42May 19, 2025Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆31Sep 27, 2019Updated 6 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆302Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Jan 14, 2026Updated 8 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Genome browser to visualize and analyze genomic data☆12Nov 22, 2021Updated 4 years ago
- ☆13May 2, 2018Updated 8 years ago
- convert various features into a GFF-like file for use in genome browsers☆73Jun 17, 2026Updated 3 months ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- ☆12Feb 16, 2025Updated last year
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 4 months ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Fast genome analysis from unassembled short reads☆327Apr 8, 2024Updated 2 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 6 years ago