GATB / DiscoSnpLinks
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
☆38Updated 2 years ago
Alternatives and similar repositories for DiscoSnp
Users that are interested in DiscoSnp are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- ☆49Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- ☆83Updated 9 months ago
- Structural variant caller☆55Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- ☆46Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Alignment-based Scrubbing pipeline☆21Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- ☆35Updated 5 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago