Scoring GT/AG sites for improving spliced alignment
☆52Nov 10, 2025Updated 5 months ago
Alternatives and similar repositories for minisplice
Users that are interested in minisplice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆84Updated this week
- Gene copy number prediction from k-mer frequencies☆16Jul 29, 2024Updated last year
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated last month
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Mar 16, 2026Updated last month
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated last month
- This is the standalone version of the EviAnn pipeline☆143Apr 2, 2026Updated 2 weeks ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆112Feb 28, 2026Updated last month
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆103Apr 8, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated 11 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆33Apr 1, 2026Updated 2 weeks ago
- Kmer Analysis of Pileups for Genotyping☆38Mar 6, 2026Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 10 months ago
- Efficient, parallel compression for terabyte-scale data☆62Feb 25, 2026Updated last month
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Mar 21, 2026Updated 3 weeks ago
- Align proteins to genomes with splicing and frameshift☆398Jan 5, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆73Nov 4, 2025Updated 5 months ago
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- TD2☆37Jan 14, 2026Updated 3 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Apr 9, 2026Updated last week
- ☆24Jul 29, 2025Updated 8 months ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆20Dec 2, 2025Updated 4 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated last month
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Jan 18, 2023Updated 3 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆54Apr 7, 2026Updated last week
- ☆30Mar 3, 2026Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Feb 24, 2026Updated last month
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year