Scoring GT/AG sites for improving spliced alignment
☆58Nov 10, 2025Updated 8 months ago
Alternatives and similar repositories for minisplice
Users that are interested in minisplice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated last year
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆94Jun 26, 2026Updated last month
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 5 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated last month
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆114Jul 11, 2026Updated 2 weeks ago
- Align proteins to genomes with splicing and frameshift☆410Jan 5, 2026Updated 6 months ago
- TD2☆41May 17, 2026Updated 2 months ago
- ☆123Jul 17, 2026Updated last week
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Telomere compliment tools☆26Nov 17, 2025Updated 8 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 3 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆62May 17, 2026Updated 2 months ago
- Mosaic Genome Assembler☆26Jul 17, 2026Updated last week
- Post-verkko graph and assembly curation in Python.☆22Jul 2, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo clustering of long transcript reads into genes☆25Dec 15, 2025Updated 7 months ago
- ☆32Mar 3, 2026Updated 4 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆99Updated this week
- syncmer graphs, and perhaps other sorts of sequence graphs☆42Jul 10, 2026Updated 2 weeks ago
- ☆44Dec 29, 2025Updated 6 months ago
- ☆42May 19, 2025Updated last year
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- FastK based version of Merqury☆33Jan 19, 2026Updated 6 months ago
- ☆18Jan 29, 2025Updated last year
- Pairwise whole genome aligner☆243Jul 16, 2026Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Updated this week
- blastn2dotplots: multiple dot-plot visualizer☆28Sep 15, 2025Updated 10 months ago