lh3 / minispliceView external linksLinks
Scoring GT/AG sites for improving spliced alignment
☆50Nov 10, 2025Updated 3 months ago
Alternatives and similar repositories for minisplice
Users that are interested in minisplice are comparing it to the libraries listed below
Sorting:
- Gene copy number prediction from k-mer frequencies☆14Jul 29, 2024Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Dec 14, 2025Updated last month
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆17Sep 23, 2025Updated 4 months ago
- An Fast variant calling tool to detection germline and somatic variants☆11Jan 31, 2026Updated last week
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Jan 26, 2026Updated 2 weeks ago
- Kmer Analysis of Pileups for Genotyping☆35Jan 30, 2026Updated 2 weeks ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 9 months ago
- A local-haplotagging-based small and structural variant caller☆94Jan 14, 2026Updated 3 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Jun 10, 2025Updated 8 months ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 2 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Efficient, parallel compression for terabyte-scale data☆58Sep 27, 2025Updated 4 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Dec 11, 2025Updated 2 months ago
- TD2☆31Jan 14, 2026Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 7 months ago
- This is the standalone version of the EviAnn pipeline☆136Feb 5, 2026Updated last week
- ☆22Jan 13, 2026Updated last month
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆18Dec 2, 2025Updated 2 months ago
- ☆14Sep 11, 2023Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆55Jun 3, 2025Updated 8 months ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆100Mar 3, 2025Updated 11 months ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Jan 12, 2026Updated last month
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Nov 4, 2025Updated 3 months ago
- Full-length transcriptome splicing and mutation analysis☆86Jun 24, 2024Updated last year
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago