lh3 / minispliceLinks
Scoring GT/AG sites for improving spliced alignment
☆49Updated 2 months ago
Alternatives and similar repositories for minisplice
Users that are interested in minisplice are comparing it to the libraries listed below
Sorting:
- ☆27Updated 4 months ago
- ☆38Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Long-read splice alignment with high accuracy☆64Updated last year
- Improving gene isoform quantification with miniQuant☆31Updated last week
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- ☆38Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆85Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- ☆20Updated 3 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- python plotly Circos from VCF☆40Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 5 months ago
- A local-haplotagging-based small and structural variant caller☆92Updated this week