NBISweden / wgs-structvarLinks
Whole Genome Sequenceing Structural Variation Pipelines
☆16Updated 6 years ago
Alternatives and similar repositories for wgs-structvar
Users that are interested in wgs-structvar are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated last month
- Python package and routines for merging VCF files☆29Updated 4 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Computes various SV statistics☆14Updated last year
- ☆30Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- SV genotyping with long reads☆39Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 5 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- ☆34Updated last year
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- ☆48Updated 11 months ago
- ☆12Updated 3 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- ☆23Updated last year