NBISweden / wgs-structvarLinks
Whole Genome Sequenceing Structural Variation Pipelines
☆17Updated 6 years ago
Alternatives and similar repositories for wgs-structvar
Users that are interested in wgs-structvar are comparing it to the libraries listed below
Sorting:
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆31Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated last week
- Population-wide Deletion Calling☆35Updated 5 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last week
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- ☆35Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Linked-Read Alignment Tool☆26Updated 6 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆51Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Structural Variant Index☆75Updated 9 months ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Structural variant caller☆55Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago