Plant-Food-Research-Open / assemblyqcLinks
A Nextflow pipeline for evaluating assembly quality
☆38Updated last month
Alternatives and similar repositories for assemblyqc
Users that are interested in assemblyqc are comparing it to the libraries listed below
Sorting:
- A program for assessing the T2T genome continuity☆92Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- MCHelper: An automatic tool to curate transposable element libraries☆45Updated 5 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Synteny Imager☆65Updated last week
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated last week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last month
- paml documentation and tutorials☆65Updated 7 months ago
- k-mer learning materials☆81Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆116Updated last month
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆43Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated last week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- ☆33Updated last year
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 2 weeks ago
- ☆35Updated 5 years ago
- Multi-genome synteny block visualization tool☆52Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆93Updated last month
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Updated 5 years ago
- ☆84Updated 3 weeks ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆68Updated last week
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Updated 9 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month