Plant-Food-Research-Open / assemblyqcLinks
A Nextflow pipeline for evaluating assembly quality
☆38Updated 2 months ago
Alternatives and similar repositories for assemblyqc
Users that are interested in assemblyqc are comparing it to the libraries listed below
Sorting:
- A program for assessing the T2T genome continuity☆92Updated last month
- MCHelper: An automatic tool to curate transposable element libraries☆45Updated 6 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Multi-genome synteny block visualization tool☆52Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated last month
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆44Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆68Updated 2 weeks ago
- paml documentation and tutorials☆66Updated last week
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Updated 10 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated 3 weeks ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- ☆45Updated 3 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- A organelle de novo genome assembly toolkit☆73Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- RepeatIdentifier☆71Updated 10 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- k-mer learning materials☆83Updated 11 months ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago