Alternatives and similar repositories for nf-chai

Users that are interested in nf-chai are comparing it to the libraries listed below

• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆20Updated 6 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆16Updated 4 years ago
• nf-core / metapep
  From metagenomes to epitopes and beyond
  ☆12Updated last week
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 2 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 3 months ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆25Updated last week
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆44Updated 9 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated last month
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆39Updated this week
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆36Updated 8 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated last month
• steineggerlab / Metabuli-App
  ☆30Updated 2 months ago
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆14Updated 2 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated last month
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated 2 months ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆20Updated 2 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 3 months ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 7 months ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆25Updated last year
• novoalab / SeqTagger
  Super-fast and accurate demultiplexing of direct RNA-seq runs.
  ☆13Updated 2 months ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• nf-core / proteinfamilies
  Generation and update of protein families
  ☆14Updated this week
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆20Updated last month
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆24Updated last year
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆21Updated 2 months ago