seqeralabs / nf-chaiLinks
POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
☆11Updated 6 months ago
Alternatives and similar repositories for nf-chai
Users that are interested in nf-chai are comparing it to the libraries listed below
Sorting:
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated last month
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Protein Sequence Annotation with Language Models☆23Updated last month
- ☆31Updated 3 years ago
- Generation and update of protein families☆14Updated last week
- Parse GFF3 into Pandas dataframes☆28Updated last year
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 5 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Deep learning embedding for nucleotide sequences☆19Updated 3 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- ☆30Updated this week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆26Updated 2 months ago
- From metagenomes to epitopes and beyond☆12Updated last month
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Plot multiple sequence alignment (MSA)☆15Updated 9 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Next-generation PRALINE sequence alignment program.☆9Updated 6 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆69Updated 3 weeks ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Find common blocks and differences between DNA sequences☆42Updated 3 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Workflow management with Nextflow and nf-core☆25Updated 5 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 4 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆59Updated 4 years ago