Alternatives and similar repositories for condaenvlist

Users that are interested in condaenvlist are comparing it to the libraries listed below

• MrTomRod / assembly-curator
  Quickly generate consensus assemblies for bacterial genomes
  ☆14Updated last month
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆46Updated last month
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆44Updated 2 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 5 months ago
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆49Updated last month
• linsalrob / sphae
  Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
  ☆39Updated last month
• bluenote-1577 / myloasm
  A new high-resolution long-read metagenome assembler for even noisy reads
  ☆99Updated last month
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• BenoitMorel / AleRax
  Gene tree - species tree reconciliation from gene tree distributions
  ☆34Updated last month
• JianjunJin / Traversome
  genomic variant frequency estimation
  ☆11Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆55Updated 6 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆62Updated 3 weeks ago
• Sudaraka88 / LDWeaver
  Genomewide Epistasis Analysis on Bacteria
  ☆14Updated 5 months ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆50Updated 3 years ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆33Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆44Updated 6 months ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆30Updated 2 weeks ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated last year
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆31Updated 2 months ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆66Updated last year
• rrwick / Verticall
  Recombination-free trees
  ☆60Updated last month
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated this week
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆41Updated 2 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆25Updated 2 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆63Updated last week
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆63Updated 4 months ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆36Updated 9 months ago