a simple tool for listing conda environments with descriptions
☆15Mar 28, 2025Updated last year
Alternatives and similar repositories for condaenvlist
Users that are interested in condaenvlist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 2 months ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆39Updated this week
- Run_dbcan V5☆56Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Genome size estimation from long read overlaps☆85Apr 13, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- Local alignment search with k-bounded matching statistics.☆23Aug 19, 2025Updated 8 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Jun 4, 2025Updated 10 months ago
- ☆27May 22, 2025Updated 11 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- a short-read polishing tool for long-read assemblies☆216Sep 19, 2025Updated 7 months ago
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 8 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆145Apr 5, 2026Updated 3 weeks ago
- ☆15Feb 10, 2025Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 weeks ago
- Plasmid analysis using rearrangement distances☆52Apr 8, 2026Updated 3 weeks ago
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆24Updated this week
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 3 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆229Updated this week
- Interpretative standards for AMR genotypes☆29Mar 24, 2026Updated last month
- Fast DNA search and [host] depletion using minimizers☆110Apr 14, 2026Updated 2 weeks ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Automated and parallel pipeline for the Curation of UltraconseRved Elements☆10Jan 16, 2025Updated last year
- Phyling: phylogenetic inference from annotated genomes☆33Apr 13, 2026Updated 2 weeks ago
- Distributed Evolutionary Algorithms in Python - Entirely Reworked☆14Aug 10, 2024Updated last year
- ☆23Feb 7, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Aug 26, 2022Updated 3 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 8 months ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Apr 16, 2026Updated 2 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆51Apr 21, 2026Updated last week
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago