rrwick / condaenvlistLinks
a simple tool for listing conda environments with descriptions
☆14Updated 9 months ago
Alternatives and similar repositories for condaenvlist
Users that are interested in condaenvlist are comparing it to the libraries listed below
Sorting:
- Quickly generate consensus assemblies for bacterial genomes☆14Updated 3 months ago
- Plasmid analysis using rearrangement distances☆49Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- Calculate assocations between genes and traits☆29Updated 10 months ago
- genomic variant frequency estimation☆11Updated 4 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆118Updated 3 weeks ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆37Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 5 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 9 months ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 7 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆36Updated 9 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆51Updated this week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated last month