nf-core / variantbenchmarkingLinks
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
☆29Updated this week
Alternatives and similar repositories for variantbenchmarking
Users that are interested in variantbenchmarking are comparing it to the libraries listed below
Sorting:
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated 10 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- python plotly Circos from VCF☆38Updated last year
- A VSCode extension pack for nf-core developers.☆15Updated 3 months ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆40Updated this week
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 4 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- TIDDIT - structural variant calling☆73Updated 2 months ago
- Master of Pores 2☆23Updated 6 months ago
- vembrane filters VCF records using python expressions☆59Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- An efficient CLI to extract sequences from the SRA☆105Updated 3 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated last week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆42Updated last month
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last month
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆26Updated 4 months ago
- ☆22Updated 6 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆75Updated this week