nf-core / genomeassembler
β18Updated this week
Alternatives and similar repositories for genomeassembler:
Users that are interested in genomeassembler are comparing it to the libraries listed below
- π π« Trim, circularise and orient long read bacterial genome assembliesβ26Updated 5 years ago
- Fast and space-efficient taxonomic classification of long readsβ43Updated this week
- Find Unique genomic Regionsβ29Updated last month
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remoβ¦β14Updated last month
- Assembly based core genome SNP alignments for bacteriaβ25Updated 5 years ago
- Bacterial GWAS analysisβ36Updated this week
- Remove human reads from a sequencing runβ37Updated 5 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformaticsβ17Updated 7 months ago
- TAXnomic Profile Aggregation and STAndardisationβ35Updated 4 months ago
- Microbial agile accurate SNP Typerβ29Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracksβ43Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.β50Updated 7 months ago
- Gene-flank analysis toolβ27Updated 2 months ago
- Influenza genome analysis Nextflow workflowβ19Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ27Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analysesβ12Updated 2 years ago
- Ancient microbiome snakemake workflowβ22Updated 2 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignmentβ56Updated last month
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencingβ15Updated 7 months ago
- A Nextflow pipeline for running synteny analysis.β14Updated this week
- SHOOT.bio - the phylogenetic search engineβ24Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strainsβ45Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genomeβ40Updated 4 years ago
- Output FASTQ summary statistics in JSON formatβ29Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological dataβ32Updated 2 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Mβ¦β14Updated 2 years ago
- Genome-Genome circle syntenyβ23Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCAβ30Updated 6 months ago
- a broadly applicable tool for automated gene identification and retrievalβ30Updated 2 months ago
- Genome size estimation from long read overlapsβ49Updated 2 months ago