sanger-tol / blobtoolkitLinks
Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.
☆14Updated last week
Alternatives and similar repositories for blobtoolkit
Users that are interested in blobtoolkit are comparing it to the libraries listed below
Sorting:
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated last week
- A pipeline to investigate horizontal gene transfer from NGS data☆26Updated 3 weeks ago
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆13Updated last week
- ☆16Updated 5 months ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Read contamination removal☆25Updated last year
- ☆14Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Implementation of ToL genome assembly workflows☆24Updated this week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- ☆29Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- ☆20Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Variant call verification☆16Updated 7 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆30Updated 3 weeks ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last month
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Sketch phylogenetic trees and networks☆24Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year
- Differential k-mer analysis☆39Updated last year
- Rapid discovery of reciprocal best blast pairs.☆10Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated last month
- ☆29Updated 2 years ago