Alternatives and similar repositories for blobtoolkit:

Users that are interested in blobtoolkit are comparing it to the libraries listed below

• sanger-tol / genomenote
  Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…
  ☆24Updated last week
• sanger-tol / readmapping
  Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
  ☆11Updated this week
• nf-core / hgtseq
  A pipeline to investigate horizontal gene transfer from NGS data
  ☆24Updated last month
• iqbal-lab-org / varifier
  Variant call verification
  ☆15Updated this week
• nf-core / genomeassembler
  ☆16Updated this week
• wdecoster / phasius
  ☆13Updated 4 months ago
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆13Updated last week
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated 2 months ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆35Updated 3 months ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated 11 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆36Updated 3 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆24Updated last month
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆47Updated last month
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 2 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 7 months ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆44Updated last year
• nf-core / bactmap
  A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
  ☆53Updated 8 months ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆35Updated last month
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆15Updated 6 months ago
• farhat-lab / fast-lineage-caller
  ☆13Updated 3 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 5 months ago
• Xiangyang1984 / Gcluster
  A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
  ☆15Updated 7 months ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆21Updated 2 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆35Updated 2 months ago
• oxli-bio / oxli
  k-mers and the like
  ☆20Updated last week
• mbhall88 / psdm
  Compute a pairwise SNP distance matrix from one or two alignment(s)
  ☆24Updated 4 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆22Updated 9 months ago
• thegenemyers / GENESCOPE.FK
  A derivative of GenomeScope2.0 modified to work with FastK
  ☆9Updated last year
• mbhall88 / tbpore
  Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
  ☆11Updated 7 months ago