Alternatives and similar repositories for blobtoolkit

Users that are interested in blobtoolkit are comparing it to the libraries listed below

• sanger-tol / genomenote
  Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…
  ☆26Updated last week
• nf-core / hgtseq
  A pipeline to investigate horizontal gene transfer from NGS data
  ☆25Updated last month
• sanger-tol / readmapping
  Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
  ☆13Updated 2 weeks ago
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆15Updated 2 weeks ago
• wdecoster / phasius
  ☆14Updated 2 months ago
• at-cg / RAFT
  ☆23Updated 9 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated this week
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated this week
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 7 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆27Updated 5 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated last month
• ERGA-consortium / pipelines
  ☆16Updated last week
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated last month
• thegenemyers / GENESCOPE.FK
  A derivative of GenomeScope2.0 modified to work with FastK
  ☆9Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 7 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated 3 months ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆17Updated 6 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 7 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆32Updated last month
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆18Updated last year
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 2 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 5 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• human-pangenomics / hprc-tutorials
  ☆17Updated last year