sanger-tol / blobtoolkitLinks
Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.
☆13Updated last week
Alternatives and similar repositories for blobtoolkit
Users that are interested in blobtoolkit are comparing it to the libraries listed below
Sorting:
- A pipeline to investigate horizontal gene transfer from NGS data☆26Updated 4 months ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated last week
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆13Updated this week
- A Nextflow pipeline for running synteny analysis.☆16Updated 3 months ago
- Read contamination removal☆25Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- ☆17Updated 3 months ago
- ☆20Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 3 weeks ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- ☆15Updated 3 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 11 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- ☆14Updated 4 years ago
- Sketch phylogenetic trees and networks☆23Updated last month
- FastK based version of Merqury☆28Updated 2 weeks ago
- Reference bias measuring toolkit☆18Updated 5 months ago
- transposable element typing pipeline☆19Updated last year
- ☆28Updated last year
- Differential k-mer analysis☆37Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Consensus genome annotation using OMA☆26Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 10 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- ☆28Updated 2 years ago
- SV genotyper for long reads with a variation graph☆12Updated 2 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆29Updated 3 weeks ago