Simple bacterial assembly and annotation pipeline
☆88May 11, 2026Updated last week
Alternatives and similar repositories for bacass
Users that are interested in bacass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆66Apr 30, 2026Updated 3 weeks ago
- Assembly and binning of metagenomes☆296Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆512Updated this week
- (Meta-)genome screening for functional and natural product gene sequences☆109Apr 30, 2026Updated 3 weeks ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Apr 30, 2026Updated 3 weeks ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- k-mer similarity analysis pipeline☆22Apr 30, 2026Updated 3 weeks ago
- Config files used to define parameters specific to compute environments at different Institutions☆109May 15, 2026Updated last week
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆106Apr 30, 2026Updated 3 weeks ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆163May 13, 2026Updated last week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆206Apr 30, 2026Updated 3 weeks ago
- A small-RNA sequencing analysis pipeline☆99May 8, 2026Updated 2 weeks ago
- gatk4 RNA variant calling pipeline☆60May 4, 2026Updated 2 weeks ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆22Oct 2, 2025Updated 7 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 months ago
- Converts bam or cram files to fastq format and does quality control.☆31May 13, 2026Updated last week
- Nascent Transcription Processing Pipeline☆22Apr 30, 2026Updated 3 weeks ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆247May 12, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆187Apr 30, 2026Updated 3 weeks ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Apr 30, 2026Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated last week
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆47Apr 24, 2024Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Apr 22, 2025Updated last year
- Demultiplexing pipeline for sequencing data☆54May 11, 2026Updated last week
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆12Jan 23, 2026Updated 3 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆226Apr 30, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to fetch metadata and raw FastQ files from public databases☆192Apr 30, 2026Updated 3 weeks ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Apr 30, 2026Updated 3 weeks ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago