nf-core / bacassLinks
Simple bacterial assembly and annotation pipeline
☆81Updated last week
Alternatives and similar repositories for bacass
Users that are interested in bacass are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Updated last week
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- seqfu - Sequece Fastx Utilities☆126Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆33Updated 8 months ago
- WtP: Phage identification via nextflow and docker or singularity☆103Updated last week
- Bioinformatics Tools☆90Updated this week
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated 2 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated last month
- ☆84Updated 2 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated last month
- Microbiome classification pipeline☆65Updated 8 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆67Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last week
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- Antibiotic resistance prediction in minutes☆113Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 4 months ago
- viralVerify: viral contig verification tool☆74Updated 4 years ago
- An R package designed for drawing gene arrow maps☆95Updated 4 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated 2 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆105Updated 2 weeks ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 9 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago