Simple bacterial assembly and annotation pipeline
☆85Mar 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for bacass
Users that are interested in bacass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆64Mar 3, 2026Updated last month
- Assembly and binning of metagenomes☆286Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆502Updated this week
- (Meta-)genome screening for functional and natural product gene sequences☆103Mar 30, 2026Updated last week
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Apr 2, 2026Updated last week
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆108Apr 5, 2026Updated last week
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆105Nov 20, 2025Updated 4 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆159Apr 1, 2026Updated last week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆203Mar 27, 2026Updated 2 weeks ago
- A small-RNA sequencing analysis pipeline☆98Jan 7, 2026Updated 3 months ago
- gatk4 RNA variant calling pipeline☆59Mar 26, 2026Updated 2 weeks ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆21Oct 2, 2025Updated 6 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated last month
- Converts bam or cram files to fastq format and does quality control.☆31Jan 22, 2026Updated 2 months ago
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 4 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆242Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆184Updated this week
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 4 months ago
- A complete pipeline for metagenomic analysis☆439Mar 11, 2026Updated last month
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆46Apr 24, 2024Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Apr 22, 2025Updated 11 months ago
- Demultiplexing pipeline for sequencing data☆54Updated this week
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 2 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆221Nov 20, 2025Updated 4 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Pipeline to fetch metadata and raw FastQ files from public databases☆190Feb 8, 2026Updated 2 months ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 5 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 4 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year