Simple bacterial assembly and annotation pipeline
☆93Jul 29, 2026Updated last month
Alternatives and similar repositories for bacass
Users that are interested in bacass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assembly and binning of metagenomes☆317Aug 24, 2026Updated last week
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Jul 27, 2026Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated 3 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆192Updated this week
- (Meta-)genome screening for functional and natural product gene sequences☆118Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆259Aug 20, 2026Updated last week
- Config files used to define parameters specific to compute environments at different Institutions☆111Updated this week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Jul 28, 2026Updated last month
- Assembly and intrahost/low-frequency variant calling for viral samples☆165Aug 21, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆200Updated this week
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆109Jul 27, 2026Updated last month
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- k-mer similarity analysis pipeline☆24Jul 27, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Jul 28, 2026Updated last month
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Demultiplexing pipeline for sequencing data☆59Aug 24, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Processing support for Greengenes2☆15Jul 31, 2023Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes