Alternatives and similar repositories for bacass:

Users that are interested in bacass are comparing it to the libraries listed below

• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 3 years ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated last month
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆65Updated 3 weeks ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆81Updated 2 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆73Updated last year
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆26Updated 11 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆27Updated 2 weeks ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆28Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 9 months ago
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆53Updated last year
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆41Updated last month
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated this week
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆43Updated 4 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆41Updated last week
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆65Updated 10 months ago
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆40Updated 4 years ago
• sepsis-omics / tutorials
  Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks
  ☆25Updated 7 months ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆57Updated 2 weeks ago
• cmmr / virmap
  ☆26Updated 3 years ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆64Updated 9 months ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆58Updated 4 months ago
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆46Updated 10 months ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆45Updated last year
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆54Updated 6 months ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆35Updated 4 months ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆70Updated 4 months ago