Edinburgh-Genome-Foundry / SequeductLinks
Sequencing analysis pipeline
☆14Updated 2 months ago
Alternatives and similar repositories for Sequeduct
Users that are interested in Sequeduct are comparing it to the libraries listed below
Sorting:
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆14Updated 4 years ago
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 weeks ago
- Find common blocks and differences between DNA sequences☆42Updated 4 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆10Updated 2 years ago
- Generation and update of protein families☆18Updated last week
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆34Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆33Updated 2 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 2 weeks ago
- ☆16Updated 5 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆12Updated last year
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated last year
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated last month
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Plot multiple sequence alignment (MSA)☆15Updated 11 months ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 3 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆19Updated 6 months ago
- Python bindings for the TaxonKit library☆41Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Updated 7 years ago
- ☆14Updated 6 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 5 months ago
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 7 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 3 months ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Updated 5 years ago
- 16S pipeline using qiime2 created with snakemake☆11Updated 4 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 3 weeks ago