Alternatives and similar repositories for Sequeduct

Users that are interested in Sequeduct are comparing it to the libraries listed below

• MoseleyBioinformaticsLab / kegg_pull
  Package that facilitates pulling database entries from KEGG via its REST API
  ☆11Updated 2 years ago
• soedinglab / BaMMmotif2
  Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…
  ☆15Updated 4 years ago
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated last week
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆14Updated 6 years ago
• ablab / nerpa
  ☆17Updated 9 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 3 weeks ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆20Updated 10 months ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated last month
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆27Updated 2 years ago
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆25Updated last year
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆15Updated 3 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last month
• nf-core / proteinfamilies
  Generation and updating of protein families
  ☆21Updated this week
• seqeralabs / nf-chai
  POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
  ☆11Updated 11 months ago
• hmdlab / ARG-BERT
  ☆10Updated 8 months ago
• KoslickiLab / MetagenomicKG
  ☆17Updated last month
• jbloomlab / phydms
  phylogenetic analyses informed by deep mutational scanning data
  ☆15Updated last year
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆16Updated last year
• mmcco / RepeatScout
  The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…
  ☆16Updated 2 years ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆13Updated 5 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 weeks ago
• songlab-cal / swga2
  ☆17Updated 2 years ago
• IKIM-Essen / RiboSnake
  16S pipeline using qiime2 created with snakemake
  ☆12Updated last month
• zorino / kaamer
  kaamer - protein identification based on amino acid kmers
  ☆12Updated 2 years ago
• jcg / d-tailor
  ☆14Updated 7 years ago
• sanger-pathogens / saffrontree
  SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
  ☆25Updated 5 years ago
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆23Updated last year
• opengenomebrowser / opengenomebrowser
  ☆17Updated last year
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆34Updated 2 years ago