GP2code / CNV-Finder
Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
☆10Updated last month
Alternatives and similar repositories for CNV-Finder:
Users that are interested in CNV-Finder are comparing it to the libraries listed below
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 9 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- Benchmark structural variant calls against a reference set☆17Updated 2 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated 11 months ago
- Genome Assembly 102☆13Updated this week
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Phasing reads with secondary alignments☆17Updated last month
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 6 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 10 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 8 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 3 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆10Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 3 weeks ago
- SV calling for diploid assemblies☆23Updated 9 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 4 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆14Updated 9 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- ☆16Updated this week
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆11Updated 10 months ago