GP2code / CNV-FinderLinks
Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
☆12Updated 7 months ago
Alternatives and similar repositories for CNV-Finder
Users that are interested in CNV-Finder are comparing it to the libraries listed below
Sorting:
- Benchmark structural variant calls against a reference set☆18Updated last week
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 2 months ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆21Updated this week
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- ☆14Updated 2 years ago
- ☆16Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- ☆12Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- Tandem repeat genotyping with long reads☆35Updated 3 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 9 months ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 months ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- ☆16Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆13Updated 4 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month