GP2code / CNV-FinderLinks
Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
☆10Updated 6 months ago
Alternatives and similar repositories for CNV-Finder
Users that are interested in CNV-Finder are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Benchmark structural variant calls against a reference set☆17Updated 7 months ago
- ☆21Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Phasing reads with secondary alignments☆18Updated 6 months ago
- A nextflow pipeline for calling exome CNVs☆9Updated 3 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- ☆16Updated 4 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Gene copy number prediction from k-mer frequencies☆13Updated 10 months ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Benchmarking variant calling in polyploids☆14Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 2 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆14Updated last year
- ☆14Updated last year
- ☆20Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 6 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- A method for measuring chromosome-specific telomere length from long reads☆21Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 8 months ago
- Tandem repeat genotyping with long reads☆28Updated 2 weeks ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A python wrapper around SURVIVOR☆20Updated last year