seqeralabs / tower-cliLinks
Nextflow Tower CLI tool
☆50Updated this week
Alternatives and similar repositories for tower-cli
Users that are interested in tower-cli are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Nextflow language support for Visual Studio Editor☆35Updated 3 weeks ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Updated 3 weeks ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Updated 3 weeks ago
- Linter rules for Nextflow DSL scripts☆33Updated 3 weeks ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆15Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆47Updated 3 weeks ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated 3 weeks ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- Variant catalogue pipeline☆26Updated 7 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- ☆29Updated 6 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Customer workshop materials☆18Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last month