nf-core / isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
☆40Updated this week
Alternatives and similar repositories for isoseq:
Users that are interested in isoseq are comparing it to the libraries listed below
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 6 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 4 years ago
- ☆46Updated 8 months ago
- ☆27Updated this week
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- python plotly Circos from VCF☆34Updated 10 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- Somatic structural variant caller for long-read data☆65Updated last week
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated this week
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆103Updated last week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- PacBio BAM toolkit☆43Updated 2 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆51Updated last week
- ☆39Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆94Updated 2 months ago
- SRF: Satellite Repeat Finder☆95Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆74Updated last week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago