Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
☆54Jul 2, 2026Updated this week
Alternatives and similar repositories for isoseq
Users that are interested in isoseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Apr 30, 2026Updated 2 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆237Jun 24, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PECAT, a phased error correct and assembly tool☆66Dec 8, 2025Updated 6 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41May 29, 2026Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆183Apr 12, 2023Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 4 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 2 months ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- Demultiplexing pipeline for sequencing data☆55May 11, 2026Updated last month
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Test data for MultiQC.☆24May 12, 2026Updated last month
- A small-RNA sequencing analysis pipeline☆100Jun 3, 2026Updated last month
- ☆15Oct 24, 2025Updated 8 months ago
- ☆20Oct 5, 2022Updated 3 years ago
- De novo construction of isoforms from long-read data☆36Jun 10, 2025Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 4 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆274Jun 20, 2026Updated 2 weeks ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated 2 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Jun 23, 2026Updated last week
- Fast and accurately polish the genome generated by long reads.☆244Jan 9, 2025Updated last year
- ☆27May 8, 2022Updated 4 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 4 years ago
- gatk4 RNA variant calling pipeline☆61Jun 3, 2026Updated last month
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆61Jun 22, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Apr 30, 2026Updated 2 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆80Jun 5, 2026Updated 3 weeks ago
- Simple bacterial assembly and annotation pipeline☆89Jun 11, 2026Updated 3 weeks ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 22, 2026Updated last week