nf-core / isoseqLinks
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
☆48Updated this week
Alternatives and similar repositories for isoseq
Users that are interested in isoseq are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Somatic structural variant caller for long-read data☆80Updated last month
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- python plotly Circos from VCF☆40Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ☆32Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- Human reference genome analysis sets☆55Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 weeks ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 8 months ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆27Updated 4 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆50Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- reference-free transcriptome assembly for short and long reads☆109Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆36Updated 2 weeks ago