PF2-pasteur-fr / checkMyIndexLinks
Search for a set of compatible indexes for your sequencing experiment
☆11Updated 5 years ago
Alternatives and similar repositories for checkMyIndex
Users that are interested in checkMyIndex are comparing it to the libraries listed below
Sorting:
- A VSCode extension pack for nf-core developers.☆15Updated 2 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 2 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆30Updated 2 weeks ago
- Genomic data interpretation and visualization Workshop☆20Updated this week
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆12Updated last week
- Params validation plugin for Nextflow pipelines☆48Updated 9 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated 2 weeks ago
- Fast sequencing data quality metrics☆26Updated this week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 weeks ago
- Variant catalogue pipeline☆25Updated last month
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last month
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated 2 weeks ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last month
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 2 months ago
- a set of NGS pipelines☆24Updated last week
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago