Alternatives and similar repositories for checkMyIndex

Users that are interested in checkMyIndex are comparing it to the libraries listed below

• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 11 months ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 4 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆31Updated last week
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated last week
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 8 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆40Updated 4 years ago
• nf-core / demultiplex
  Demultiplexing pipeline for sequencing data
  ☆47Updated this week
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆50Updated last week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆76Updated this week
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆52Updated 7 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆108Updated 3 weeks ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆25Updated 2 months ago
• snakemake-workflows / dna-seq-benchmark
  A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
  ☆12Updated 3 weeks ago
• Clinical-Genomics / fusion-report
  Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…
  ☆27Updated last month
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆32Updated last week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 5 months ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 2 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆20Updated last week
• sagc-bioinformatics / mgikit
  mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
  ☆13Updated last week
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆27Updated this week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆74Updated 3 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated this week
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 2 weeks ago