Alternatives and similar repositories for checkMyIndex

Users that are interested in checkMyIndex are comparing it to the libraries listed below

• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 9 months ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 5 months ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 7 years ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆80Updated this week
• nf-core / demultiplex
  Demultiplexing pipeline for sequencing data
  ☆50Updated 3 weeks ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆71Updated 5 months ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆34Updated last week
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆49Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated 2 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆89Updated 2 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆44Updated this week
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆87Updated 3 weeks ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆99Updated 4 months ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆56Updated 2 months ago
• sigven / cpsr
  Cancer Predisposition Sequencing Reporter (CPSR)
  ☆61Updated 4 months ago
• gexijin / shinygo
  ☆32Updated 2 weeks ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆27Updated 2 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆40Updated last year
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆88Updated 10 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆81Updated 3 weeks ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆50Updated 5 years ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 6 months ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆52Updated last week
• ssadedin / bazam
  A read extraction and realignment tool for next generation sequencing data
  ☆102Updated 2 years ago