PF2-pasteur-fr / checkMyIndex
Search for a set of compatible indexes for your sequencing experiment
☆11Updated 5 years ago
Alternatives and similar repositories for checkMyIndex
Users that are interested in checkMyIndex are comparing it to the libraries listed below
Sorting:
- A VSCode extension pack for nf-core developers.☆15Updated 2 months ago
- Fast sequencing data quality metrics☆26Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated last week
- Variant catalogue pipeline☆25Updated 2 weeks ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- ☆23Updated 5 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆12Updated 2 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated this week
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 6 months ago
- A bioinformatics pipeline to phase and impute genetic data☆22Updated 2 weeks ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated last month
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- Params validation plugin for Nextflow pipelines☆48Updated 9 months ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆12Updated 11 months ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year