A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
☆24Sep 11, 2026Updated last week
Alternatives and similar repositories for detaxizer
Users that are interested in detaxizer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- Converts bam or cram files to fastq format and does quality control.☆32Sep 14, 2026Updated last week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆35Jul 28, 2026Updated last month
- Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for pre…☆16Sep 1, 2026Updated 3 weeks ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Sep 11, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A proof of concept daisy-chaining Nextflow workflows☆35Sep 14, 2026Updated last week
- Assembly and binning of metagenomes☆321Updated this week
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated last month
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆64Sep 11, 2026Updated last week
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆202Updated this week
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆16Jul 21, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆81Updated this week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆194Sep 15, 2026Updated last week
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Sep 9, 2026Updated last week
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 3 months ago
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Aug 17, 2026Updated last month
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.☆36Updated this week
- Simple bacterial assembly and annotation pipeline☆93Sep 11, 2026Updated last week
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 7 months ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Sep 11, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Aug 10, 2026Updated last month
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆27Sep 11, 2026Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Sep 8, 2026Updated 2 weeks ago
- Gene Ontology subgraph visualizations☆19Jan 6, 2026Updated 8 months ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Sep 11, 2026Updated last week
- Fasten toolkit, for streaming operations on fastq files☆86Sep 10, 2026Updated last week
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 4 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆260Updated this week
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Nextflow runs monitoring and organisation UI☆79Sep 20, 2024Updated 2 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆29May 7, 2026Updated 4 months ago
- Surveillance of pathogens using population genomics and sequencing☆62Sep 3, 2026Updated 2 weeks ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jul 21, 2026Updated 2 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year