nf-core / detaxizerLinks
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
☆22Updated last week
Alternatives and similar repositories for detaxizer
Users that are interested in detaxizer are comparing it to the libraries listed below
Sorting:
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆29Updated last week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 3 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Remove human reads from a sequencing run☆40Updated 2 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Creating alignment plots from bam files☆65Updated this week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 4 months ago
- ☆29Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Gene-flank analysis tool☆33Updated 10 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 2 months ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated 2 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆39Updated last week
- Pan-Genomic Matching Statistics☆53Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated last month
- Surveillance of pathogens using population genomics and sequencing☆43Updated last week
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆78Updated last month
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 6 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆59Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated this week