A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
☆24Nov 20, 2025Updated 4 months ago
Alternatives and similar repositories for detaxizer
Users that are interested in detaxizer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 4 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Apr 2, 2026Updated last week
- Converts bam or cram files to fastq format and does quality control.☆31Jan 22, 2026Updated 2 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆34Jun 3, 2025Updated 10 months ago
- Assembly and binning of metagenomes☆286Apr 6, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 10 months ago
- Influenza genome analysis Nextflow workflow☆25Mar 24, 2026Updated 3 weeks ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆18Mar 12, 2026Updated last month
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆57Mar 6, 2026Updated last month
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆184Updated this week
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆15Nov 11, 2025Updated 5 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆190Feb 8, 2026Updated 2 months ago
- Surveillance of pathogens using population genomics and sequencing☆59Feb 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 4 months ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆23Nov 20, 2025Updated 4 months ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 30, 2026Updated 2 weeks ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated last month
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.☆34Apr 6, 2026Updated last week
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Apr 2, 2026Updated last week
- ☆13Feb 11, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 7 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆20Apr 7, 2026Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆91Updated this week
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Mar 31, 2026Updated 2 weeks ago
- (Meta-)genome screening for functional and natural product gene sequences☆103Mar 30, 2026Updated 2 weeks ago
- Gene Ontology subgraph visualizations☆20Jan 6, 2026Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆44Apr 1, 2026Updated last week
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆242Updated this week
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Apr 23, 2024Updated last year
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Apr 3, 2026Updated last week
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated this week