A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
☆24Nov 20, 2025Updated 3 months ago
Alternatives and similar repositories for detaxizer
Users that are interested in detaxizer are comparing it to the libraries listed below
Sorting:
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 3 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 3 months ago
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆21Nov 20, 2025Updated 3 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆33Jun 3, 2025Updated 9 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆56Feb 13, 2026Updated 2 weeks ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated last week
- Converts bam or cram files to fastq format and does quality control.☆31Jan 22, 2026Updated last month
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆32Nov 20, 2025Updated 3 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jan 16, 2025Updated last year
- Assembly and binning of metagenomes☆273Updated this week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆179Updated this week
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆18Feb 4, 2026Updated last month
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 4 months ago
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 3 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆40Updated this week
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.☆33Nov 20, 2025Updated 3 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Updated this week
- Surveillance of pathogens using population genomics and sequencing☆58Feb 13, 2026Updated 2 weeks ago
- Influenza genome analysis Nextflow workflow☆24Jan 26, 2026Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆187Feb 8, 2026Updated 3 weeks ago
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 5 months ago
- Gene Ontology subgraph visualizations☆20Jan 6, 2026Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Nov 20, 2025Updated 3 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Feb 5, 2026Updated 3 weeks ago
- Test data for MultiQC.☆24Feb 21, 2026Updated last week
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jan 5, 2026Updated last month
- ☆13Feb 11, 2026Updated 3 weeks ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 2 months ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last week
- Analyzes whole genome sequencing data for gene-editing verification☆10Feb 6, 2026Updated 3 weeks ago
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Feb 7, 2026Updated 3 weeks ago
- Simple bacterial assembly and annotation pipeline☆85Feb 23, 2026Updated last week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 9 months ago
- gatk4 RNA variant calling pipeline☆59Feb 10, 2026Updated 3 weeks ago