A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
☆41Sep 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for multiplesequencealign
Users that are interested in multiplesequencealign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆32Sep 11, 2026Updated 3 weeks ago
- Python package for processing deep learning models☆16Dec 12, 2025Updated 9 months ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 10 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆14Updated this week
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆64Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Updated this week
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 7 months ago
- Protein 3D structure prediction pipeline☆115Updated this week
- nf-test utility functions☆13Sep 29, 2026Updated last week
- Test data for MultiQC.☆24Updated this week
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆29Aug 21, 2026Updated last month
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆118Jul 21, 2026Updated 2 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Sep 16, 2026Updated 3 weeks ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Updated this week
- gatk4 RNA variant calling pipeline☆61Sep 23, 2026Updated 2 weeks ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆200Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 6 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆57Updated this week
- Simple bacterial assembly and annotation pipeline☆93Updated this week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆23Sep 24, 2026Updated 2 weeks ago
- Surveillance of pathogens using population genomics and sequencing☆62Updated this week
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆28Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Oct 2, 2026Updated last week
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- NEFF Calculator and MSA File Converter☆16May 6, 2026Updated 5 months ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆28Updated this week
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Aug 17, 2026Updated last month
- Test data to be used for automated testing with the nf-core pipelines☆163Updated this week
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆23Updated this week
- A small-RNA sequencing analysis pipeline☆101Oct 2, 2026Updated last week
- Compare the quality of multiple genomes, along with their annotations.☆26Sep 16, 2026Updated 3 weeks ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Updated this week
- Primalscheme3. Generation of highly multiplex primerschemes☆28Sep 24, 2026Updated 2 weeks ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆113Updated this week