A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
☆40Nov 20, 2025Updated 4 months ago
Alternatives and similar repositories for multiplesequencealign
Users that are interested in multiplesequencealign are comparing it to the libraries listed below
Sorting:
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆30Nov 20, 2025Updated 4 months ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 3 months ago
- Python package for processing deep learning models☆15Dec 12, 2025Updated 3 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆57Mar 6, 2026Updated 2 weeks ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 4 months ago
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆26Mar 6, 2026Updated 2 weeks ago
- nf-test utility functions☆12Mar 5, 2026Updated 2 weeks ago
- Test data for MultiQC.☆24Mar 3, 2026Updated 2 weeks ago
- Protein 3D structure prediction pipeline☆99Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆52Feb 5, 2026Updated last month
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 weeks ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆112Oct 2, 2025Updated 5 months ago
- Surveillance of pathogens using population genomics and sequencing☆59Feb 13, 2026Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Nov 20, 2025Updated 4 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Mar 10, 2026Updated last week
- gatk4 RNA variant calling pipeline☆59Mar 9, 2026Updated last week
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 3 weeks ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆189Feb 8, 2026Updated last month
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆22Nov 20, 2025Updated 4 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 9 months ago
- Compare the quality of multiple genomes, along with their annotations.☆20Mar 9, 2026Updated last week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 4 months ago
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 3 months ago
- Test data to be used for automated testing with the nf-core pipelines☆153Updated this week
- Simple bacterial assembly and annotation pipeline☆85Mar 13, 2026Updated last week
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆32Nov 20, 2025Updated 4 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆23Mar 13, 2026Updated last week
- A small-RNA sequencing analysis pipeline☆98Jan 7, 2026Updated 2 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆90Mar 13, 2026Updated last week
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- ☆13Feb 11, 2026Updated last month
- Converts bam or cram files to fastq format and does quality control.☆32Jan 22, 2026Updated last month
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆75Mar 13, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week