nf-core / multiplesequencealignLinks
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
☆35Updated last month
Alternatives and similar repositories for multiplesequencealign
Users that are interested in multiplesequencealign are comparing it to the libraries listed below
Sorting:
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated this week
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated last year
- Python bindings for the TaxonKit library☆41Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- Webin command line submission program.☆33Updated last week
- Fully automated generation of UCSC assembly hubs☆34Updated 10 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Automatically exported from code.google.com/p/prank-msa☆28Updated 4 months ago
- Get, parse, and extract information from the SRA metadata files☆44Updated 2 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- ☆28Updated 3 years ago
- gatk4 RNA variant calling pipeline☆51Updated 3 weeks ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆27Updated 5 years ago
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- Find Unique genomic Regions☆30Updated last week
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 5 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆16Updated 2 weeks ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 8 months ago
- Multithreaded read analysis☆18Updated last week