A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
☆41Sep 11, 2026Updated last week
Alternatives and similar repositories for multiplesequencealign
Users that are interested in multiplesequencealign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Sep 11, 2026Updated last week
- Python package for processing deep learning models☆16Dec 12, 2025Updated 9 months ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 9 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated last month
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆63Sep 11, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Sep 11, 2026Updated last week
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 6 months ago
- Protein 3D structure prediction pipeline☆115Sep 11, 2026Updated last week
- nf-test utility functions☆13Updated this week
- Test data for MultiQC.☆24Sep 5, 2026Updated 2 weeks ago
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆29Aug 21, 2026Updated 3 weeks ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆118Jul 21, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 24, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Sep 8, 2026Updated last week
- gatk4 RNA variant calling pipeline☆61Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆201Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆56Sep 11, 2026Updated last week
- Simple bacterial assembly and annotation pipeline☆93Sep 11, 2026Updated last week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆23Sep 12, 2026Updated last week
- Surveillance of pathogens using population genomics and sequencing☆61Sep 3, 2026Updated 2 weeks ago
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆26Sep 11, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Updated this week
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- NEFF Calculator and MSA File Converter☆15May 6, 2026Updated 4 months ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆28Updated this week
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Aug 17, 2026Updated last month
- Test data to be used for automated testing with the nf-core pipelines☆164Updated this week
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆23Updated this week
- A small-RNA sequencing analysis pipeline☆101Sep 1, 2026Updated 2 weeks ago
- Compare the quality of multiple genomes, along with their annotations.☆26Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Updated this week
- Primalscheme3. Generation of highly multiplex primerschemes☆27Dec 4, 2025Updated 9 months ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆112Sep 9, 2026Updated last week