A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
☆41May 29, 2026Updated last month
Alternatives and similar repositories for multiplesequencealign
Users that are interested in multiplesequencealign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Apr 30, 2026Updated last month
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 6 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆61Jun 22, 2026Updated last week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Apr 30, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆27Updated this week
- nf-test utility functions☆12May 22, 2026Updated last month
- Test data for MultiQC.☆24May 12, 2026Updated last month
- Protein 3D structure prediction pipeline☆108Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆53May 7, 2026Updated last month
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 4 months ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆115Oct 2, 2025Updated 8 months ago
- Surveillance of pathogens using population genomics and sequencing☆60Apr 30, 2026Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆54Apr 30, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- gatk4 RNA variant calling pipeline☆61Jun 3, 2026Updated 3 weeks ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Updated this week
- A nextflow pipeline for calling exome CNVs☆14Jun 22, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆196May 29, 2026Updated last month
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆25Apr 30, 2026Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Compare the quality of multiple genomes, along with their annotations.☆22Jun 12, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Jun 16, 2026Updated last week
- Primalscheme3. Generation of highly multiplex primerschemes☆23Dec 4, 2025Updated 6 months ago
- Test data to be used for automated testing with the nf-core pipelines☆164Updated this week
- Simple bacterial assembly and annotation pipeline☆89Jun 11, 2026Updated 2 weeks ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Updated this week
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Apr 1, 2026Updated 2 months ago
- A small-RNA sequencing analysis pipeline☆100Jun 3, 2026Updated 3 weeks ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆94Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- ☆13Jun 15, 2026Updated 2 weeks ago
- Converts bam or cram files to fastq format and does quality control.☆32Jun 17, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆80Jun 5, 2026Updated 3 weeks ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Jun 22, 2026Updated last week