nf-core / seqinspectorLinks
QC pipeline to inspect your sequences
☆14Updated 2 weeks ago
Alternatives and similar repositories for seqinspector
Users that are interested in seqinspector are comparing it to the libraries listed below
Sorting:
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆12Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 5 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated last week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated last week
- Parsing and evaluating gene annotation and spliced alignment☆25Updated 2 weeks ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 6 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆52Updated this week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆24Updated last week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- vembrane filters VCF records using python expressions☆61Updated this week
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Nextflow language support for Visual Studio Editor☆34Updated this week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 8 months ago
- ☆43Updated 10 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated last week
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- A nextflow pipeline for calling exome CNVs☆11Updated last month