nf-core / seqinspectorLinks
Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.
☆18Updated 2 weeks ago
Alternatives and similar repositories for seqinspector
Users that are interested in seqinspector are comparing it to the libraries listed below
Sorting:
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 7 months ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- BED QC tool (in the making)☆17Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 2 months ago
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Updated last week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆38Updated last week
- Structural variant (SV) analysis tools☆40Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- R package for DNA methylation analysis☆20Updated last year
- ☆18Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago