nf-core / proteinfamiliesLinks
Generation and updating of protein families
☆21Updated this week
Alternatives and similar repositories for proteinfamilies
Users that are interested in proteinfamilies are comparing it to the libraries listed below
Sorting:
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆33Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 8 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆80Updated last month
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 7 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆63Updated last year
- High throughput tool for tall and wide multiple sequence alignment.☆21Updated last week
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated last month
- ☆17Updated 9 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated last week
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆19Updated 9 months ago
- ☆36Updated 5 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Updated 2 years ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 11 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 3 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated 2 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 8 months ago
- Software for predicting translation initiation rates in bacteria☆30Updated 4 months ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆16Updated 4 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated 11 months ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆27Updated last week