Generation and updating of protein families
☆23Feb 27, 2026Updated last week
Alternatives and similar repositories for proteinfamilies
Users that are interested in proteinfamilies are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 3 months ago
- Protein 3D structure prediction pipeline☆99Updated this week
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 6 months ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- ☆16Jan 14, 2026Updated last month
- ☆24Nov 14, 2025Updated 3 months ago
- nf-test utility functions☆12Feb 13, 2026Updated 3 weeks ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- Modular Genome Assembly, Annotation and Assessment Pipeline☆21Updated this week
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆14Sep 6, 2023Updated 2 years ago
- Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.☆19Jun 3, 2025Updated 9 months ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Dec 14, 2024Updated last year
- ☆14Dec 23, 2025Updated 2 months ago
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated 10 months ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated last month
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 4 years ago
- High throughput tool for tall and wide multiple sequence alignment.☆26Feb 10, 2026Updated 3 weeks ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆20Feb 20, 2026Updated 2 weeks ago
- FuncFetch workflow scripts☆15Jun 9, 2025Updated 8 months ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Search for a set of compatible indexes for your sequencing experiment☆11Sep 6, 2019Updated 6 years ago
- ☆17Feb 11, 2026Updated 3 weeks ago
- An atlas of CRISPR-Cas systems from systematic genome mining☆25Aug 5, 2025Updated 7 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆33Jun 3, 2025Updated 9 months ago
- Nail is an Alignment Inference tooL☆55Feb 21, 2026Updated 2 weeks ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 3 months ago
- ESM-driven Pocket Cross Similarity☆15Aug 11, 2025Updated 6 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jan 16, 2025Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- JavaScript artefacts and deployment documents for JalviewJS☆17Jan 24, 2025Updated last year
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- ☆19Feb 15, 2025Updated last year
- ☆16May 22, 2023Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- DFAST Quality Control: Taxonomy and completeness check☆18May 7, 2025Updated 10 months ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆85Nov 13, 2025Updated 3 months ago