Generation and updating of protein families
☆23Oct 26, 2026Updated last week
Alternatives and similar repositories for proteinfamilies
Users that are interested in proteinfamilies are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build protein families from sequence clusters by iterative HMM search over very large databases — streaming, deterministic, pyHMMER-based…☆12Sep 28, 2026Updated last month
- nf-core pipeline for data submission to ENA☆22Updated this week
- Modular Genome Assembly, Annotation and Assessment Pipeline☆23Mar 16, 2026Updated 7 months ago
- Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper☆11Jun 17, 2025Updated last year
- Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.☆19Oct 7, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Jul 1, 2026Updated 4 months ago
- nf-test utility functions☆13Sep 29, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last month
- Protein 3D structure prediction pipeline☆116Oct 27, 2026Updated last week
- Params validation plugin for Nextflow pipelines☆47Aug 7, 2024Updated 2 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 4 months ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆15Sep 6, 2023Updated 3 years ago
- ☆25Sep 22, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆10Jul 14, 2026Updated 3 months ago
- findGSEP package☆10Jul 27, 2024Updated 2 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆14Updated this week
- ☆11Jun 2, 2025Updated last year
- OxyMetaG: Oxygen metabolism profiling from metagenomic data☆14Aug 8, 2026Updated 2 months ago
- Generation of sequence-level annotations for amino acid sequences☆16Oct 26, 2026Updated last week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 5 months ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Phyling: phylogenetic inference from annotated genomes☆34Oct 27, 2026Updated last week
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆42Updated this week
- ☆21Jul 12, 2026Updated 3 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 9 months ago
- Fast Species Tree Inference☆11Aug 17, 2026Updated 2 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Oct 27, 2026Updated last week
- Approximate UniFrac via Weighted MinHash 🦀☆13Updated this week
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆20Feb 28, 2022Updated 4 years ago
- Scripts to generate and analyze afdb clusters☆12Sep 15, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆30Jul 16, 2022Updated 4 years ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- Nail is an Alignment Inference tooL☆71Updated this week
- ☆12Jan 8, 2026Updated 9 months ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- Docker containers for bioinformatics with a small footprint☆23May 25, 2026Updated 5 months ago
- ESM-driven Pocket Cross Similarity☆18Aug 11, 2025Updated last year