nf-core / genomeqcView external linksLinks
Compare the quality of multiple genomes, along with their annotations.
☆20Jan 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for genomeqc
Users that are interested in genomeqc are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 7 months ago
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆20Nov 20, 2025Updated 2 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Nov 14, 2025Updated 2 months ago
- Surveillance of pathogens using population genomics and sequencing☆54Feb 6, 2026Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Feb 2, 2026Updated last week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 8 months ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 2 months ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated this week
- A Nextflow pipeline for genome and pan-genome annotation☆15Feb 3, 2026Updated last week
- ☆33Feb 1, 2026Updated last week
- Demultiplexing pipeline for sequencing data☆52Feb 5, 2026Updated last week
- ☆15Aug 8, 2025Updated 6 months ago
- Imputation Server 2 workflow to facilitate genotype imputation at scale.☆40Dec 10, 2025Updated 2 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 2 months ago
- ☆16Feb 2, 2026Updated last week
- ☆27Nov 14, 2025Updated 3 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Dec 24, 2025Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆38Updated this week
- ☆20Jan 30, 2026Updated 2 weeks ago
- ☆43Jan 23, 2026Updated 3 weeks ago
- ☆19Nov 17, 2025Updated 2 months ago
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆15Updated this week
- Whole genome visualization and comparative genomics in R☆21Feb 18, 2025Updated 11 months ago
- Classic hello world script in Nextflow language☆23Feb 6, 2026Updated last week
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆18Feb 6, 2026Updated last week
- Simple bacterial assembly and annotation pipeline☆81Jan 28, 2026Updated 2 weeks ago
- The Nextflow language server☆28Updated this week
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆54Updated this week
- gatk4 RNA variant calling pipeline☆59Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 8 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Dec 3, 2025Updated 2 months ago
- CDS prediction in transcripts☆24Mar 5, 2025Updated 11 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 2 months ago
- A small-RNA sequencing analysis pipeline☆99Jan 7, 2026Updated last month
- Test data for MultiQC.☆24Dec 21, 2025Updated last month
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25May 10, 2025Updated 9 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Jun 3, 2025Updated 8 months ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Jan 31, 2026Updated last week
- fastest GTF/GFF-to-BED converter chilling around☆31Jan 20, 2026Updated 3 weeks ago