Compare the quality of multiple genomes, along with their annotations.
☆25Aug 13, 2026Updated this week
Alternatives and similar repositories for genomeqc
Users that are interested in genomeqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated last week
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Aug 7, 2026Updated last week
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆26Jul 27, 2026Updated 2 weeks ago
- Implementation of ToL genome assembly workflows☆33Updated this week
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Aug 5, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Nextflow pipeline for evaluating assembly quality☆41Updated this week
- Tiberius is a deep learning gene finder.☆130Updated this week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Jul 29, 2026Updated 2 weeks ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- Surveillance of pathogens using population genomics and sequencing☆62Jul 27, 2026Updated 2 weeks ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Aug 4, 2026Updated last week
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆18Updated this week
- ☆11Dec 12, 2014Updated 11 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- Imputation Server 2 workflow to facilitate genotype imputation at scale.☆51Jun 9, 2026Updated 2 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated 2 weeks ago
- ☆32Mar 3, 2026Updated 5 months ago
- ☆93Jul 31, 2026Updated 2 weeks ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆38Apr 7, 2026Updated 4 months ago
- CDS prediction in transcripts☆22Mar 5, 2025Updated last year
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆37Jul 18, 2026Updated 3 weeks ago
- Demultiplexing pipeline for sequencing data☆59Updated this week
- This is the standalone version of the EviAnn pipeline☆182Updated this week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆40Jul 28, 2026Updated 2 weeks ago
- gatk4 RNA variant calling pipeline☆61Updated this week
- ☆20Nov 17, 2025Updated 8 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19May 19, 2026Updated 2 months ago
- The Nextflow language server☆31Aug 5, 2026Updated last week
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Whole genome visualization and comparative genomics in R☆25Feb 18, 2025Updated last year
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Jul 27, 2026Updated 2 weeks ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆27Updated this week
- A nextflow pipeline for calling modifications in nanopore reads.☆16Updated this week
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.☆16Updated this week
- ☆17Aug 3, 2026Updated last week