Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
☆20Feb 18, 2026Updated 2 weeks ago
Alternatives and similar repositories for tumourevo
Users that are interested in tumourevo are comparing it to the libraries listed below
Sorting:
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated last month
- ☆11Apr 25, 2024Updated last year
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated last month
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated last year
- DriverPower☆26Jan 18, 2025Updated last year
- ☆21Feb 25, 2026Updated last week
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- ☆18Jan 30, 2023Updated 3 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 9 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Feb 27, 2026Updated last week
- Tip and tricks for VCF files☆21Sep 26, 2018Updated 7 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆23Updated this week
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆21Nov 20, 2025Updated 3 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆103Updated this week
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆51Updated this week
- gatk4 RNA variant calling pipeline☆59Feb 10, 2026Updated 3 weeks ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 3 months ago
- PyPop: Python for Population Genomics☆25Updated this week
- Probabilistic Machine Learning course lab @UNITS☆19Jun 16, 2022Updated 3 years ago
- Sito web del corso "LABORATORIO DI PROGRAMMAZIONE I" per Intelligenza Artificiale e per Statistica dell'Università degli studi di Trieste…☆22Aug 6, 2025Updated 7 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆189Updated this week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Feb 28, 2026Updated last week
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Oct 19, 2025Updated 4 months ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Mar 1, 2026Updated last week
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Aug 22, 2023Updated 2 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated 2 months ago
- MANOVA.RM☆11Feb 7, 2025Updated last year
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 8 months ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 3 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 8 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆40Mar 2, 2026Updated last week
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆85Updated this week
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆32Oct 29, 2025Updated 4 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆90Updated this week