nf-core / tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
☆12Updated 2 months ago
Alternatives and similar repositories for tumourevo:
Users that are interested in tumourevo are comparing it to the libraries listed below
- ☆21Updated 3 months ago
- ☆26Updated 11 months ago
- Nascent Transcription Processing Pipeline☆18Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆12Updated last week
- ☆21Updated 10 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Master of Pores 2☆23Updated 3 months ago
- ☆19Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- interactive plots for differential expression analysis☆32Updated last week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆25Updated last week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 3 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated last week
- Two pass alignment for long reads☆22Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 weeks ago
- A VSCode extension pack for nf-core developers.☆14Updated 3 weeks ago
- ☆28Updated 3 months ago
- ☆33Updated last year
- ☆13Updated 11 months ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆10Updated 10 months ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated last week