nf-core / crisprseqLinks
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
☆46Updated this week
Alternatives and similar repositories for crisprseq
Users that are interested in crisprseq are comparing it to the libraries listed below
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 8 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆111Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated 2 weeks ago
- ☆58Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆172Updated last year
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆56Updated 3 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆152Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last month
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 3 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆103Updated 2 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆85Updated 3 weeks ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆75Updated 11 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 11 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆191Updated 2 weeks ago