nf-core / crisprseqLinks
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
☆53Updated last week
Alternatives and similar repositories for crisprseq
Users that are interested in crisprseq are comparing it to the libraries listed below
Sorting:
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆81Updated last week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆135Updated 3 weeks ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆57Updated 2 weeks ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆57Updated 3 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆53Updated 6 months ago
- ☆58Updated 2 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- Quantification of transposable element expression using RNA-seq☆75Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 7 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆46Updated 2 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 9 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆47Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 7 months ago
- ☆63Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆86Updated last week
- Software for Quantifying Interspersed Repeat Expression☆62Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆35Updated this week
- A small-RNA sequencing analysis pipeline☆92Updated 3 months ago
- ☆104Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago