nf-core / crisprseqLinks
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
☆53Updated this week
Alternatives and similar repositories for crisprseq
Users that are interested in crisprseq are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆82Updated last week
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last month
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆140Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆59Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago
- ☆59Updated 2 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆47Updated 3 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆53Updated 4 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆69Updated last month
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆101Updated 3 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 8 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆54Updated 7 months ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 10 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ☆104Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- Tools for analyzing DNA methylation data☆43Updated this week
- ☆63Updated 3 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated 2 weeks ago