Alternatives and similar repositories for exoseq

Users that are interested in exoseq are comparing it to the libraries listed below

• cbcrg / kallisto-nf
  A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
  ☆23Updated 7 years ago
• HadrienG / nanoflow
  De novo assembly of nanopore reads using nextflow
  ☆20Updated 5 years ago
• guigolab / chip-nf
  An automated ChIP-seq pipeline using Nextfow
  ☆18Updated 3 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 5 months ago
• isugifNF / GATK-flow
  Nextflow implementation of the GATK HaplotypeCaller pipeline
  ☆13Updated 4 months ago
• mikessh / mageri
  MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
  ☆21Updated 8 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• nextflow-io / nf-hack17-tutorial
  Nextflow basic tutorial for newbie users
  ☆33Updated 7 years ago
• lifebit-ai / DeepVariant
  Deep Variant as a Nextflow pipeline
  ☆30Updated 5 years ago
• nf-core / cookiecutter
  DEPRECIATED! Please use nf-core/tools instead
  ☆19Updated 7 years ago
• NCGG-MGC / IMSindel
  IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …
  ☆16Updated 2 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated last year
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 2 weeks ago
• crukci-bioinformatics / MGA
  The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.
  ☆25Updated 4 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 9 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• J35P312 / FindSV
  Structural variant pipeline
  ☆17Updated 5 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 7 months ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 3 years ago
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆35Updated 8 years ago
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆32Updated 5 years ago
• bcbio / bcbio_validation_workflows
  A community menagarie of automated variant validations using bcbio and the Common Workflow Language
  ☆21Updated 4 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated 2 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Updated 6 years ago
• hellosunking / Ktrim
  Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
  ☆31Updated last month