nf-core / differentialabundanceLinks
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
☆84Updated this week
Alternatives and similar repositories for differentialabundance
Users that are interested in differentialabundance are comparing it to the libraries listed below
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 3 weeks ago
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last week
- ☆104Updated last week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆141Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆89Updated this week
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Test data to be used for automated testing with the nf-core pipelines☆141Updated last week
- RNA-Seq analysis workflow☆105Updated 4 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆155Updated this week
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 8 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 2 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆53Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- Learning the Variant Call Format☆144Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Updated last week
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆109Updated 2 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆51Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Publication quality NGS track plotting☆114Updated 2 weeks ago