nf-core / differentialabundanceLinks
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
☆84Updated last week
Alternatives and similar repositories for differentialabundance
Users that are interested in differentialabundance are comparing it to the libraries listed below
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆119Updated last month
- A small-RNA sequencing analysis pipeline☆97Updated 5 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆143Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆127Updated 3 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆93Updated this week
- ☆105Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆69Updated last week
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Publication quality NGS track plotting☆115Updated last month
- FEELnc : FlExible Extraction of LncRNA☆90Updated 3 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated last week
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 3 months ago
- ☆59Updated 4 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Updated last month
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆104Updated 3 weeks ago
- ☆97Updated last month
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆51Updated 2 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆102Updated last month
- Tip and tricks for BAM files☆86Updated 7 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆132Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆156Updated this week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated this week
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago