nf-core / scnanoseqLinks
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
☆42Updated last week
Alternatives and similar repositories for scnanoseq
Users that are interested in scnanoseq are comparing it to the libraries listed below
Sorting:
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated last month
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆38Updated last week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆28Updated 7 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- An R interface to the MEME Suite☆50Updated last month
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last month
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆23Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- ☆29Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- A program for the analysis of single cell nanopore long read data☆19Updated 2 weeks ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 weeks ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- PSI-Sigma☆38Updated last year
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆29Updated 9 months ago