Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
☆55Jun 26, 2026Updated last week
Alternatives and similar repositories for scnanoseq
Users that are interested in scnanoseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆23Jun 29, 2026Updated last week
- long read RNA-seq quantification☆115Jun 7, 2026Updated 3 weeks ago
- The Flexible Demultiplexer☆44Mar 30, 2026Updated 3 months ago
- ☆113Jan 23, 2026Updated 5 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆227Apr 30, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆27Mar 9, 2026Updated 3 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Apr 16, 2026Updated 2 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆68Jun 26, 2026Updated last week
- SingleCell Nanopore sequencing data analysis☆68May 30, 2025Updated last year
- ☆23Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆92May 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 11 months ago
- ☆24Apr 14, 2022Updated 4 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Apr 29, 2024Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆25Updated this week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆37May 9, 2024Updated 2 years ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆336Jun 29, 2026Updated last week
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆63Jun 26, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- UAB Research Computing Documentation☆24Jun 5, 2026Updated last month
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 3 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆92Mar 6, 2026Updated 4 months ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated last week
- ☆115Jun 18, 2026Updated 2 weeks ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24May 29, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆230Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆80Jun 5, 2026Updated last month
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated last month
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 3 weeks ago
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆25Apr 30, 2026Updated 2 months ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Jun 8, 2026Updated 3 weeks ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated last year