nanoporetech / pomfretLinks
☆19Updated last month
Alternatives and similar repositories for pomfret
Users that are interested in pomfret are comparing it to the libraries listed below
Sorting:
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- PGR-TK: Pangenome Research Tool Kit☆14Updated 3 months ago
- Reference bias measuring toolkit☆18Updated 2 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated this week
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- Yet another nanopore modification comparison tool☆12Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Extracting paths from assembly graphs☆23Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Fast and exact gap-affine partial order alignment☆51Updated 2 weeks ago
- SV calling for diploid assemblies☆27Updated last year
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- Tandem repeat genotyping with long reads☆28Updated last month
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- ☆24Updated 6 months ago
- ☆17Updated last year
- ☆21Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 6 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- ☆29Updated last month