nanoporetech / pomfretLinks
☆26Updated 2 months ago
Alternatives and similar repositories for pomfret
Users that are interested in pomfret are comparing it to the libraries listed below
Sorting:
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- Kmer Analysis of Pileups for Genotyping☆35Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Updated 4 months ago
- implicit pangenome graph☆88Updated this week
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- ☆22Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆27Updated 3 weeks ago
- Fast and exact gap-affine partial order alignment☆59Updated last week
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- ☆31Updated 9 months ago
- Extracting paths from assembly graphs☆24Updated last year
- Statistics and analysis for variation graphs☆48Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- ☆38Updated 3 weeks ago
- ☆51Updated last year
- Differential k-mer analysis☆39Updated 2 years ago
- Centromere mapping and annotation pipeline☆21Updated 3 weeks ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 3 months ago
- convert PAF format to CHAIN format☆34Updated 8 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago