Alternatives and similar repositories for pomfret

Users that are interested in pomfret are comparing it to the libraries listed below

• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆27Updated 8 months ago
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆16Updated this week
• maojanlin / biastools
  Reference bias measuring toolkit
  ☆18Updated 3 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated 11 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated last month
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆52Updated last week
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 weeks ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 7 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆38Updated last month
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆14Updated 4 months ago
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆28Updated 2 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆25Updated 8 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆31Updated 3 weeks ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆41Updated 7 months ago
• pangenome / impg
  implicit pangenome graph
  ☆66Updated this week
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆27Updated 7 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 9 months ago
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆35Updated last month
• hitbc / gcSV
  ☆21Updated 4 months ago
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆28Updated last month
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• PacificBiosciences / HiFi-somatic-WDL
  Tumor-normal variant calling workflow using HiFi reads
  ☆20Updated last month
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆29Updated 8 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• logsdon-lab / CenMAP
  Centromere mapping and annotation pipeline
  ☆13Updated this week