nf-core / deepmodeloptim
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
☆23Updated this week
Related projects ⓘ
Alternatives and complementary repositories for deepmodeloptim
- Params validation plugin for Nextflow pipelines☆48Updated 3 months ago
- A VSCode extension pack for nf-core developers.☆14Updated last month
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆19Updated this week
- A nextflow variant benchmarking pipeline - premature☆12Updated this week
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- Experimental features for Nextflow☆31Updated last month
- ☆33Updated 3 weeks ago
- BigWig and BAM utilities☆92Updated 7 months ago
- ☆47Updated 2 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆20Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated last month
- NGSNGS: Next generation simulator for next generation sequencing data☆47Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆57Updated 7 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆41Updated last month
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆22Updated 2 weeks ago
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated last year
- Tools and software library developed by the ONT Applications group☆61Updated 3 years ago
- Demultiplexing pipeline for sequencing data☆44Updated this week
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Filter SAM file for soft and hard clipped alignments☆46Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆48Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- Merging paired-end reads and removing adapters☆45Updated 4 years ago
- gatk4 RNA variant calling pipeline☆37Updated last month
- Reference genome resource manager☆74Updated 11 months ago