nf-core / deepmodeloptim
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
☆25Updated this week
Alternatives and similar repositories for deepmodeloptim:
Users that are interested in deepmodeloptim are comparing it to the libraries listed below
- Params validation plugin for Nextflow pipelines☆48Updated 6 months ago
- A nextflow variant benchmarking pipeline - premature☆14Updated this week
- This repository hosts a large collection of Nextflow snippets☆57Updated 3 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆20Updated 3 months ago
- Experimental features for Nextflow☆38Updated last month
- A VSCode extension pack for nf-core developers.☆14Updated 4 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆15Updated 2 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆20Updated this week
- ☆35Updated 2 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆36Updated 3 weeks ago
- ☆48Updated 5 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆59Updated this week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆27Updated this week
- Somatic structural variant caller for long-read data☆59Updated this week
- vembrane filters VCF records using python expressions☆58Updated 4 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆94Updated last month
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago
- Testing building mulled containers for multi-requirement tools.☆70Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆58Updated 4 months ago
- Structural Variant Index☆71Updated 2 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆72Updated this week
- ☆13Updated last month
- Simple pileup-based variant caller☆86Updated 10 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- BigWig and BAM utilities☆93Updated 10 months ago
- A proof of concept daisy-chaining Nextflow workflows☆17Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆72Updated 2 months ago