Alternatives and similar repositories for ReproHackathon:

Users that are interested in ReproHackathon are comparing it to the libraries listed below

• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• EBI-Metagenomics / ebi-metagenomics-cwl
  This repository contains the CWL description of the EBI Metagenomics pipeline
  ☆21Updated 4 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated 2 weeks ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 4 years ago
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆93Updated 3 weeks ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated this week
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• usegalaxy-eu / ena-upload-cli
  ENA upload tool - script your Open Data upload to the European Nucleotide Archive
  ☆28Updated 2 weeks ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆27Updated 3 months ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• Geo-omics / scripts
  Metagenomic pipeline and other general scripts used in the lab.
  ☆35Updated 3 months ago
• GenomicsStandardsConsortium / mixs
  Minimum Information about any (X) Sequence” (MIxS) specification
  ☆43Updated this week
• galaxyproject / awesome-galaxy
  Awesome resources related to Galaxy project
  ☆12Updated 5 months ago
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated last month
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆61Updated 4 months ago
• IARCbioinfo / IARC-nf
  List of IARC bioinformatics nextflow pipelines
  ☆50Updated 3 months ago
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆28Updated this week
• bio-tools / ToolDog
  Generating tool descriptors from bio.tools
  ☆9Updated 6 years ago
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated 3 weeks ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated 5 months ago
• nf-core / bamtofastq
  Converts bam or cram files to fastq format and does quality control.
  ☆26Updated last month
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆20Updated 2 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆14Updated 9 months ago
• datasnakes / OrthoEvolution
  An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
  ☆28Updated 4 months ago
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆28Updated this week