IFB-ElixirFr / ReproHackathonLinks
Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow
☆12Updated 5 years ago
Alternatives and similar repositories for ReproHackathon
Users that are interested in ReproHackathon are comparing it to the libraries listed below
Sorting:
- Testing building mulled containers for multi-requirement tools.☆80Updated this week
- ENA upload cli - script your Open Data upload to the European Nucleotide Archive☆28Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated 2 weeks ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆39Updated this week
- de novo assembly of RNA-seq data using ABySS☆34Updated 2 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- A proof of concept daisy-chaining Nextflow workflows☆29Updated 3 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago
- Whole Genome Sequenceing Structural Variation Pipelines☆17Updated 6 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- Nextflow runs monitoring and organisation UI☆77Updated last year
- Convert CWL to WDL☆17Updated 9 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated last week
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 10 months ago
- List of tools included in https://usegalaxy.eu☆33Updated last week
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆96Updated 2 weeks ago
- Experimental features for Nextflow☆45Updated 3 months ago
- Reference genome resource manager☆74Updated last year
- Parallelised and automated construction of metagenomic classifier databases of different tools☆16Updated last week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆28Updated this week
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Generating tool descriptors from bio.tools☆10Updated 7 years ago
- A Nextflow pipeline to play Doom☆10Updated 10 months ago