IFB-ElixirFr / ReproHackathonLinks
Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow
☆12Updated 5 years ago
Alternatives and similar repositories for ReproHackathon
Users that are interested in ReproHackathon are comparing it to the libraries listed below
Sorting:
- This repository contains the CWL description of the EBI Metagenomics pipeline☆21Updated 4 years ago
- Metagenomic pipeline and other general scripts used in the lab.☆35Updated 4 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- reference free variant assembly☆33Updated last year
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 5 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- ENA upload tool - script your Open Data upload to the European Nucleotide Archive☆28Updated this week
- Awesome resources related to Galaxy project☆12Updated 6 months ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- The command-line interface to GGD☆43Updated 2 years ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆93Updated last week
- Handy command line utility for Galaxy administrators☆23Updated 2 months ago
- Minimum Information about any (X) Sequence” (MIxS) specification☆46Updated this week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated this week
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 4 months ago
- Test data for MultiQC.☆22Updated last week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆41Updated 3 weeks ago
- Testing building mulled containers for multi-requirement tools.☆73Updated this week
- Get, parse, and extract information from the SRA metadata files☆41Updated 2 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated last week
- Experimental plugin to integrate GPT like prompt into Nextflow☆15Updated last year
- Simple tool to verticalize text delimited files.☆36Updated last year
- A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.☆17Updated 3 years ago
- CWL for GDC DNASeq workflows☆22Updated last month
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Galaxy Admin Training☆61Updated 6 months ago
- The Ensembl Compara Perl API and SQL schema☆52Updated this week
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 6 months ago