nextflow-io / nf-validationLinks
Params validation plugin for Nextflow pipelines
☆48Updated 10 months ago
Alternatives and similar repositories for nf-validation
Users that are interested in nf-validation are comparing it to the libraries listed below
Sorting:
- Experimental features for Nextflow☆43Updated 3 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆42Updated last month
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated this week
- vembrane filters VCF records using python expressions☆60Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆26Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated this week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated 2 weeks ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 5 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 3 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆38Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- ☆40Updated this week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- BigWig and BAM utilities☆96Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 6 months ago
- Creating alignment plots from bam files☆65Updated last week
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last month
- ☆21Updated last year
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 2 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- A collection of modules and sub-workflows for Nextflow☆26Updated 3 weeks ago
- ☆9Updated 8 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- ☆48Updated 10 months ago
- Fully automated generation of UCSC assembly hubs☆34Updated 8 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆52Updated 6 months ago