nextflow-io / nf-validationLinks
Params validation plugin for Nextflow pipelines
☆48Updated last year
Alternatives and similar repositories for nf-validation
Users that are interested in nf-validation are comparing it to the libraries listed below
Sorting:
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Updated this week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆23Updated 2 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 11 months ago
- BigWig and BAM utilities☆102Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Experimental features for Nextflow☆48Updated last month
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Updated last year
- Nextflow runs monitoring and organisation UI☆77Updated last year
- Structural Variant Index☆75Updated last year
- A proof of concept daisy-chaining Nextflow workflows☆30Updated 5 months ago
- vembrane filters VCF records using python expressions☆68Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆33Updated 8 months ago
- Select primer sets for selective whole genome amplification (SWGA)☆33Updated 6 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- TIDDIT - structural variant calling☆78Updated 2 months ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last week
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Updated 5 years ago