nextflow-io / nf-validationLinks
Params validation plugin for Nextflow pipelines
☆48Updated last year
Alternatives and similar repositories for nf-validation
Users that are interested in nf-validation are comparing it to the libraries listed below
Sorting:
- This repository hosts a large collection of Nextflow snippets☆56Updated 11 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Updated last month
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- BigWig and BAM utilities☆100Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- A VSCode extension pack for nf-core developers.☆15Updated 10 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- vembrane filters VCF records using python expressions☆68Updated last week
- Experimental features for Nextflow☆47Updated 3 weeks ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- Fast sequencing data quality metrics☆31Updated 4 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated 2 months ago
- A proof of concept daisy-chaining Nextflow workflows☆29Updated 4 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- seqfu - Sequece Fastx Utilities☆124Updated 3 weeks ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 weeks ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated this week
- Powerful statistics for VCF files☆73Updated 2 months ago
- Structural Variant Index☆75Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago