nextflow-io / nf-schemaLinks
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
☆50Updated this week
Alternatives and similar repositories for nf-schema
Users that are interested in nf-schema are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆23Updated 2 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆42Updated last week
- Experimental features for Nextflow☆48Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated this week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆38Updated 2 weeks ago
- seqfu - Sequece Fastx Utilities☆126Updated last week
- ☆52Updated 4 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- vembrane filters VCF records using python expressions☆68Updated last month
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 4 months ago
- python plotly Circos from VCF☆40Updated last year
- Structural Variant Index☆75Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆52Updated 2 months ago
- Creating alignment plots from bam files☆107Updated this week
- ☆32Updated 2 months ago
- CRyPTIC data processing pipelines☆34Updated last year
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- A VSCode extension pack for nf-core developers.☆15Updated 11 months ago
- Structural variant (SV) analysis tools☆40Updated last year
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Grep for FASTQ files☆103Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Specifications for PacBio® native file formats☆31Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year