Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
☆57Oct 5, 2026Updated this week
Alternatives and similar repositories for nf-schema
Users that are interested in nf-schema are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 6 months ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- Simple test framework for Nextflow pipelines☆192Apr 27, 2026Updated 5 months ago
- ☆13Updated this week
- nf-test utility functions☆13Sep 29, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A proof of concept daisy-chaining Nextflow workflows☆35Sep 14, 2026Updated 3 weeks ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Oct 1, 2026Updated last week
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆28Updated this week
- This repository hosts a large collection of Nextflow snippets☆55Jan 26, 2025Updated last year
- Test data to be used for automated testing with the nf-core pipelines☆163Updated this week
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Updated this week
- Command line tool for Wave containers provisioning service☆19Updated this week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆23Updated this week
- Nextflow runs monitoring and organisation UI☆79Sep 20, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Customer workshop materials☆19May 13, 2026Updated 4 months ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆51Updated this week
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Updated this week
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- A GitHub action to install Nextflow☆31Updated this week
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 10 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆64Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated last year
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆29Aug 21, 2026Updated last month
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆431Updated this week
- Experimental features for Nextflow☆54Sep 11, 2026Updated last month
- A bioinformatics pipeline to phase and impute genetic data☆35Updated this week
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆32Sep 11, 2026Updated last month
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆72Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Nextflow language support for Visual Studio Editor☆38Updated this week
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Sep 11, 2026Updated last month
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆31May 17, 2026Updated 4 months ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆192Oct 3, 2026Updated last week