Alternatives and similar repositories for nf-schema:

Users that are interested in nf-schema are comparing it to the libraries listed below

• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆49Updated 7 months ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆21Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated 2 weeks ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆26Updated this week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• PacificBiosciences / HiFi-SVTopo
  Complex structural variant visualization for HiFi sequencing data
  ☆26Updated this week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated this week
• epi2me-labs / wf-alignment
  ☆27Updated last month
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated last month
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆25Updated this week
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated this week
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆35Updated 3 months ago
• fakedrtom / SVAFotate
  ☆39Updated 6 months ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆33Updated 9 months ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆40Updated last week
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated this week
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 8 months ago
• openwdl / workflow-template-wdl
  ☆9Updated 4 months ago
• molgenis / vip
  Variant Interpretation Pipeline
  ☆23Updated this week
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 4 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 7 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• Psy-Fer / blue-crab
  crab go snap snap
  ☆37Updated last month
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆35Updated last year
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆14Updated 2 weeks ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated this week
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆28Updated last month
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆37Updated last week