Alternatives and similar repositories for nf-schema

Users that are interested in nf-schema are comparing it to the libraries listed below

• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 2 months ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 8 months ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆45Updated last month
• ryanlayer / stix
  Structural Variant Index
  ☆75Updated 9 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated 3 weeks ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆120Updated last week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆36Updated this week
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated 2 weeks ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 5 months ago
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆45Updated 3 weeks ago
• epi2me-labs / modbam2bed
  ☆49Updated last week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 5 months ago
• epi2me-labs / wf-alignment
  ☆31Updated 3 weeks ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆21Updated 2 weeks ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆85Updated this week
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 3 months ago
• gluonfield / nf-shard
  Nextflow runs monitoring and organisation UI
  ☆77Updated last year
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆64Updated last week
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated 10 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆36Updated last week
• epi2me-labs / wf-basecalling
  ☆46Updated last week
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆40Updated last year
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆36Updated last week
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆46Updated 4 years ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆108Updated this week
• telatin / bamtocov
  🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
  ☆64Updated 3 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆76Updated 6 months ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆100Updated 6 years ago